KEGG   Alteromonas mediterranea U8: I634_17630
Entry
I634_17630        CDS       T02722                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
amao  Alteromonas mediterranea U8
Pathway
amao03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    I634_17630 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amao03021]
    I634_17630 (rpoB)
   03400 DNA repair and recombination proteins [BR:amao03400]
    I634_17630 (rpoB)
Enzymes [BR:amao01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     I634_17630 (rpoB)
Transcription machinery [BR:amao03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     I634_17630 (rpoB)
DNA repair and recombination proteins [BR:amao03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      I634_17630 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 SPG4
Other DBs
NCBI-ProteinID: AGP95204
Position
complement(4022578..4026606)
AA seq 1342 aa
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIETDPEAQYGLEAAFRSVFPIK
SYSGSSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFDKVNVRIDKDKLMME
VVPDRLRGETAAFDIIDGEGNVVVETGRRISARHTRALEKAGLNELEVPADYLIGRVYAA
TYVNEDTGEVIVSANEELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFDNLFFSDERYDLSSVGRMKFNRRLGREELIGSGT
LDKEDIISVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVV
TDEIDYLSAIEEGQFAIAQANIALTENGELVDDLIPCRHRGETTLMPTEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK
RGGVVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVT
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LTDEFEILADGIFARAKTALLRAGVDQAKLDSLPREKWFEIALNSEDAQLELDQIADQHA
EIKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKEQRELA
ELREFLKKVYELGENHQEVDIDNFTDHEVRRLAENLRKGVPIATPVFDGARESEIKEMLK
LADIPESGQISLFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtattggaaattccataccttctttcaattcagcttgattctttcaaaaagtttattgag
accgatccggaagctcaatacggtttggaagcagcatttcgttccgtttttccaattaaa
agctactcaggtagttcagagcttcagtatgtaagctaccgcctgggagagccagttttc
gacgttaaagaatgtcaaattcgtggcgtaactttctctgctccattaagagtaaaacta
cggttagtgttgttcgataaagacgctgccccaggtaccgtaaaagatattaaagaacaa
gaagtgtacatgggcgagatcccattgatgacagagaacggtacgttcgttatcaatggt
actgagcgtgttatcgtgtcacagctacaccgttcacctggtgtattctttgatcacgac
aaaggtaaaacccactcgtcaggtaaagtgctatataacgcacgtgtaattccttaccgt
ggttcgtggttagactttgagtttgacccgaaagataacctatttgtacgtatcgaccgt
cgtcgtaagttgcctgcaacgattattttacgcgcacttgaaatgacgtctgaagaaatc
ctagatactttcttcgacaaagttaatgtacgtattgataaagacaagttgatgatggaa
gtggtgccagatcgcctacgtggtgaaacggctgcatttgacattatcgatggcgaaggc
aacgtggttgttgaaaccggtcgtcgtatctcagcacgtcatacacgtgcgctagagaaa
gcgggtcttaatgagcttgaagttccagcagattacctaattggccgcgtatacgccgct
acttacgtaaacgaagacactggcgaagttattgtaagcgcgaacgaagaactaaccctt
gaaaacctagcggcacttagccaagcgggcatcaaagaattcgaaacgctttacattaac
gaactcgatcacggttcatatatctcagatacactgcgtatcgactcttcaactaatcgc
ttagaagcgctagttgaaatttaccgtatgatgcgtcctggtgagccaccaacaaaagac
gcagcagaaaccttgttcgataacttgttcttctcagatgaacgttacgacctatcttct
gttggccgcatgaagttcaaccgccgtttaggtcgtgaagaacttattggttcaggcaca
ctagataaagaagacattatttctgtaatgaagcagctaataatgattcgtgacggtaaa
gacgaagtcgatgatatcgatcacctaggtaaccgtcgtatccgttctgttggtgaaatg
gcagagaaccaattccgcgttggtcttgtacgtgtagagcgtgcagttaaagagcgtcta
agcttaggcgatctagacaacgtaatgccacaggacctaatcaacgctaagcctatctcg
gctgcggttaaagagttcttcggttcatctcagctttctcagttcatggaccaaaacaac
ccgctatcagaagtaacgcacaaacgtcgtatttctgcattaggcccgggtggtcttaca
cgtgaacgtgcaggcttcgaggttcgagacgtacacccgacccactacggtcgtctatgt
ccaatcgaaacgccggaaggcccgaacatcggtctaattaactcattggcaagcttcgcg
cgtaccaatgacttcggtttcttagaaacgcctttccgtcgtattgttgacggtgtggta
acagacgaaatcgattatttatctgcaattgaagaaggtcaattcgcaatcgctcaggct
aacattgcgttgactgagaatggcgagttggttgacgacctaattccttgtcgtcaccgc
ggtgaaactactttgatgccgactgaagacatcaaatacatggacgtttcaccacagcaa
atcgtttcaattgcggcaagcattattccattcctagagcacgatgacgcaaaccgtgca
cttatgggtgcgaacatgcaacgtcaggcagtacctacactacgcgctgataagccgcta
gttggtaccggtatggaaagaactatcgcggttgactcaggtgttactgtagttgctaag
cgcggtggtgtggttgactatgttgatgccagccgtatcgtaattaaagtagacgaagat
gaaatgcttccaggtgaagcaggtatcgatatctacaacctgactaaatacacgcgttct
aaccagaacacttgtatcaatcagaagcctacctgtagcgttggcgacccgattgttact
ggtgacgtgctagctgacggtccttcaacagacctaggtgaccttgcacttggtcagaac
atgcgtattgcgttcatgccttggaatggttacaactttgaggattcaatccttatttct
gagcgtgtagcacaggaagaccgtttcactacaatccacattcaagagcttagctgtatc
gctcgtgatactaagcttgggccagaagagatttcttctgatatcccgaacgtgggtgaa
tctgcactaagcaagcttgatgaatcaggtgttgtttacattggtgcggaagtgaaaggc
ggtgacatcctagtaggtaaagtaacgcctaaaggtgaaactcagcttacgccagaagag
aaactactacgtgcaatcttcggtgaaaaagcgtctgacgttaaagatacgtcgctacgt
gtacctaactctgttcacggtaccgtaattgacgttcaagtatttacccgtgacggtgta
gagaaagataagcgtgcgcttgaaattgaagacatgcagctacgtcaggttaagaaagac
cttactgacgagttcgaaattcttgcagacggtatttttgctcgtgcaaaaactgcgctt
ctacgtgctggtgttgaccaagctaagcttgacagcctaccgcgtgaaaagtggtttgaa
attgcacttaacagcgaagatgcacagctagagctagaccaaatcgctgatcaacacgct
gaaattaaagcggacttcgataagaagtttgaaactaagcgtcgtaaaatcacacaaggc
gatgacctagcgcctggcgtacttaagattgttaaggtttaccttgcggttaagcgtcac
atccaaccgggtgacaagatggccggtcgtcacggtaacaaaggtgttatctcgactatc
cagcctgtagaagacatgccatacgatgctaacggtacgccggtagatatcgttcttaac
ccactaggtgtaccgtctcgtatgaacatcggtcagatcctagaaacgcacttgggtatg
gctgcacacggtcttggtgtgaagattgatcgcatgattaaagagcagcgtgagctggct
gaactgcgtgagttcttgaagaaggtgtacgagcttggtgaaaatcaccaagaagttgac
atcgataacttcacagaccacgaagtacgtcgcttagcggaaaaccttcgtaagggtgtt
ccaattgcaacaccagtatttgatggtgctcgtgaatctgaaatcaaagaaatgctgaag
cttgctgatattccagaaagcggtcagatttcattgttcgacggtcgtaccggtcgcgag
ttcgagcgtccagttacggttggttacatgtacatgctgaaactgaaccacttagtagac
gacaagatgcacgcgcgttctacgggttcttacagccttgttacacagcagcctcttggt
ggtaaagcacagtttggtggtcagcgcttcggtgagatggaagtgtgggcacttgaagca
tacggtgcagcatatacccttcaggaaatgcttactgttaagtcagatgacgttaacggc
cgtaccaagatgtacaagaacatcgtcgatggcgatcacagaatggaacctggcatgcca
gaatcattcaacgtactacttaaagaaattcgctcgttgggtatcaacatcgagcttgaa
gaaaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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