KEGG   Alteromonas mediterranea DE: MADE_1000075
Entry
MADE_1000075      CDS       T00747                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
amc  Alteromonas mediterranea DE
Pathway
amc03030  DNA replication
amc03410  Base excision repair
amc03420  Nucleotide excision repair
amc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:amc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MADE_1000075
   03410 Base excision repair
    MADE_1000075
   03420 Nucleotide excision repair
    MADE_1000075
   03440 Homologous recombination
    MADE_1000075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amc03032]
    MADE_1000075
   03400 DNA repair and recombination proteins [BR:amc03400]
    MADE_1000075
Enzymes [BR:amc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     MADE_1000075
DNA replication proteins [BR:amc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MADE_1000075
DNA repair and recombination proteins [BR:amc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     MADE_1000075
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MADE_1000075
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: AEA96164
UniProt: F2G1R7
Position
complement(14884..17676)
AA seq 930 aa
MPDSKKPPFILVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLKSLIKQYNPTHMAV
IFDAKGKTFRDDIYKEYKANRPPMPEELRSQIEPLHTIIKAMGLPVIVESGVEADDVIGT
LAKHATEKGIDTLISTGDKDMAQLVNKHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFL
ALKGDKVDNIPGVPGVGDKSAQALLNGIGGIDEIYKNLDKIADLSFRGSKSMAAKMEEYE
EQARLSYTLATISIDLELDYDVETLMPCQADNEQLRDLFAEYEFKRWHAEVSALLAGGDT
SSATESTSAESSDSTQTSESATSGDIDKSKYETVLDEETFNTWLGKLQKAQLIAFDTETT
SLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFVLDALKPILESSNIIKVGQ
HIKYDKNVLANYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEDIAGK
GAKQLTFNQIALEEAGPYAAEDADITLRLHNTIWAKLKEIPELKNLLIDVEVPLACVLSR
MEQEGVLIDSQRLSQQSQDLAARIAELEKEVHEEAGEPFNLGSTKQLQHILFEKMSLPII
KKTPKGAPSTSEDVLQELALEYPLPKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSY
HQAITATGRLSSTDPNLQNIPIRNEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLSG
DKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNI
PRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGA
ERAAINAPMQGTAADIIKMAMIKVDDWISKNAADDVTMMMQVHDELVFEIKEDKVDSYVK
TINTLMESAATLNVPLVVEAGVGENWDEAH
NT seq 2793 nt   +upstreamnt  +downstreamnt
atgcctgattctaaaaagccgccatttattcttgttgatggatcgtcttatctctttcgt
gcttttcacggtctaccacctttaaccaactcaaaaggtcaagacaccggcgctatttac
ggcgttgtaaatatgctcaagagcctgatcaaacaatataacccaactcacatggcggtt
atttttgacgctaaaggcaaaacctttcgcgacgatatttataaagaatataaagctaac
cgcccgccaatgccggaagagctaagaagtcagatcgagcccttacacacgattatcaaa
gcgatgggtctaccggttattgttgagtcgggtgtggaagctgatgatgttattggtaca
ttagcaaagcacgccacagaaaaagggatcgatacacttatcagtacgggcgacaaagat
atggctcaactggtgaacaagcatgtcacactaatcaataccatgactaaccagcttatg
gatgtggaaggtgtaaatactaaattcggtatccctcctgaacttgtgatcgactttctc
gcgcttaaaggcgacaaggttgataacatcccaggcgtgccaggggttggtgataaaagc
gctcaagcactattaaacggtatcggcggtattgacgagatatataagaatttagacaag
atcgccgacctttcatttagaggcagtaagtcgatggctgctaaaatggaagagtatgaa
gaacaggcccgcctttcttacaccctcgccacgattagtatcgatctggaattggactac
gatgtcgaaacgctaatgccttgccaagccgacaatgaacaacttcgcgatctatttgcc
gaatacgagtttaagcgttggcacgctgaagtgagtgctttgttagcaggcggcgataca
tctagtgctacagaatccacaagcgctgaaagcagcgactctacgcaaacgagtgaatct
gcgacatctggcgatattgataagtctaagtatgagaccgtgctagatgaagaaacattt
aatacttggcttggcaaattgcaaaaagcacagctcattgcgtttgatactgaaacgacc
agccttaattatatggatgcagagcttgttggcgtctcattttgtattgaagaaggtgag
gctgcctatgtacctgtagcgcatgattacccagatgctccgacacagttatctcgcgag
tttgtattagatgcacttaagcctattttagaatcgagcaatatcattaaagtaggtcag
catatcaaatacgataaaaacgtattggcaaactacgatattacgttgaacggtattggc
tttgacaccatgcttgagagttatgtgcttaacagcactgcacaacgtcacgacatggac
tcccttgctcttgcctatctcggccacaaaaccattcactttgaagacattgccggtaaa
ggggcgaagcaacttacgtttaaccaaattgctcttgaggaagctgggccgtatgctgct
gaagatgcggatattacgcttcgcttgcacaatacaatatgggctaagctgaaagaaatt
ccagagcttaagaacttgttaattgatgtagaagtgccccttgcttgcgtactgtcgcga
atggagcaagaaggggtattaattgatagtcaaagattgagtcagcaaagccaagatctt
gccgcccgtatcgctgagctggaaaaagaagtccatgaagaagccggcgaaccatttaac
cttggttcaacaaagcagcttcaacatattctatttgaaaagatgtcgctgcccataata
aagaaaacgcctaaaggcgcgccatcaacgtctgaagacgtgctacaggagcttgccctt
gaatacccgcttcccaagaaaattatggaataccggggattaaccaagttgaaaaatacc
tacaccgataagcttccaaagatgatcaatcatcgaacaggccgtgtccacacatcttac
catcaggccataacagcgaccggaagactctcttctaccgatccgaatttacaaaacatc
cctattcgcaacgaagaaggccgtcgtgtacgccaagcctttgttccccgtaaaggaaac
aagtttgttgctgccgattactcgcaaattgaactgcgcattatggctcatctgtcaggg
gataaaggtctgttagatgcgtttgcacatggcaaagatatacataaagccaccgcatca
gaggtatttggggtgccgcttgacgaagtaacaaccgaacagcgacgtagcgctaaggcc
attaactttggccttatttacggcatgagtgcatttgggttggctaagcaattaaatatt
ccccgtaatgaagcccagaaatacatggatctttacttcgaacgttaccctggtgtactt
gaatatatggactcaacccgcgagagtgcaaaagaaaaaggctatgttgaaacggtattt
ggccgacgtctttacctgccagatattaaagcaagcaatggtgcccgtagaaaaggcgca
gaacgcgccgctatcaatgcgcctatgcagggtacagccgcagacatcattaaaatggct
atgatcaaagtggatgactggatttcaaagaatgccgcagacgatgtcactatgatgatg
caagtgcacgatgagttagtgttcgaaataaaagaagataaagtcgatagctatgtgaag
accatcaacacgcttatggaaagcgctgcaacgcttaatgtaccgcttgttgttgaagcg
ggtgttggtgaaaactgggacgaagcgcactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (153)   
   KEGG ORTHOLOGY (1)   
   RefGene (150)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (169)   

Download RDF
DBGET integrated database retrieval system