KEGG   Alteromonas mediterranea DE: MADE_1008480
Entry
MADE_1008480      CDS       T00747                                 
Symbol
sbcB
Name
(GenBank) exonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
amc  Alteromonas mediterranea DE
Pathway
amc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    MADE_1008480 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amc03400]
    MADE_1008480 (sbcB)
Enzymes [BR:amc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     MADE_1008480 (sbcB)
DNA repair and recombination proteins [BR:amc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     MADE_1008480 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     MADE_1008480 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      MADE_1008480 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: AEA97836
UniProt: F2G9F7
Position
complement(1843075..1844640)
AA seq 521 aa
MNECFTVAFASYTPFSIAYITINIWYCILRSVHCVQYFIDNVLVVMHTPTFLWHDFETFG
TSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHPEACLVTGITPQQTIRDGSN
EADFAAKIYHEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREWRNGNSRWDIIDV
ARACYALRPDGINWPLREDGSPSFRLEALTAANNIGHDNAHDALNDVYATISLAKLIKEK
QPRLFDYALSLRNKHSVMQQIDLSKPSVLLHISSKLPASQGCCTWVMPIAKHPTNSNAFI
VIDLSHDIDSVLNDSADEIKQALYAPSDTYDDARERPGLKLIHVNRSPFITTAKAMTEDN
AERLGLDRERCLDNYKKLASTPDLVSKIVAIYEEERHSSELDIDHALYSGGFLSDEDRRW
CENVINAKPEDLATFGDKTQHEGLKKLLFRYRARNYPNTLSADEMTKWQYHRQARLTDSD
FHGSITLETYMMRLESLAHEHSDNPEKQAILRALYQYAENL
NT seq 1566 nt   +upstreamnt  +downstreamnt
gtgaatgaatgttttacagtcgcctttgcttcgtatactccgttcagcattgcctatata
accatcaacatttggtattgtattttacgcagtgtacactgcgttcaatatttcattgat
aacgtactggtggttatgcatacacctacatttttgtggcacgatttcgaaacctttggc
acaagcccacaaaaagatctcccttgccaatttgccgctgttagaacggacatggactta
aatgtcgttggtaagcccatcaatattatgagcgcaattgctaacgattacctgcctcat
ccagaagcgtgtcttgttactgggatcacgcctcaacaaaccatcagagatggctcaaac
gaagctgattttgctgcaaaaatttatcatgagatgtctacgccgaatacctgtagcgtg
ggctttaatagtattcgcttcgacgatgaagtgtcccgctatctattttatcgaaacttc
tacgacccgtattcaagagaatggcgcaatggaaatagccgctgggacatcatcgacgta
gcaagagcctgctatgcgttaagaccagacggtatcaattggccattgagagaagatggt
tcgccaagttttaggcttgaagcattaacggctgccaataatatcggacatgataacgca
cacgatgcgctaaacgacgtttacgccaccatatctcttgccaagctgataaaagaaaag
cagccgcgcttattcgactacgcgctttctttgcgtaataagcattccgttatgcagcaa
atagatttgagcaagccatcagtattgcttcatatatcgtcaaagctgccggcctcacag
ggttgctgtacatgggttatgccgattgctaaacacccgactaattccaatgcgtttatc
gtgattgatttgtctcacgatatagacagcgtgttaaatgattctgcagatgaaattaag
caagcactgtacgcgccttccgatacgtatgatgatgcgcgagagcgcccggggcttaag
cttattcacgtgaaccgctctcccttcattaccacagccaaagccatgacagaagacaat
gcagagcggctcggcttagaccgcgagcgctgcttagataactacaaaaagctggcaagc
acaccagatttagttagtaaaattgtggcaatatatgaagaagagcgacatagcagcgaa
cttgatattgaccacgcgctatacagcggcgggttccttagcgatgaagaccggcgctgg
tgtgaaaatgtgataaatgctaaaccagaagatttagcgacgttcggtgataaaacgcag
cacgaagggttgaaaaaattgctgtttcgatatcgcgcaagaaactaccccaatacgctt
tctgccgacgaaatgacaaaatggcagtaccaccgtcaggcgcgactcaccgattcggat
tttcacggttctataacgctggaaacctatatgatgaggcttgaatctctggctcatgag
cacagtgacaaccctgaaaagcaagcgatattacgcgccctctatcaatatgccgaaaac
ctttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (67)   
   KEGG ORTHOLOGY (1)   
   RefGene (64)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (76)   

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