KEGG   Amycolatopsis mediterranei U32: AMED_3840
Entry
AMED_3840         CDS       T01269                                 
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NADP+)
  KO
K00135  succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
Organism
amd  Amycolatopsis mediterranei U32
Pathway
amd00250  Alanine, aspartate and glutamate metabolism
amd00310  Lysine degradation
amd00350  Tyrosine metabolism
amd00650  Butanoate metabolism
amd00760  Nicotinate and nicotinamide metabolism
amd01100  Metabolic pathways
amd01120  Microbial metabolism in diverse environments
Module
amd_M00027  GABA (gamma-Aminobutyrate) shunt
amd_M00957  Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:amd00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00650 Butanoate metabolism
    AMED_3840 (gabD)
  09105 Amino acid metabolism
   00250 Alanine, aspartate and glutamate metabolism
    AMED_3840 (gabD)
   00310 Lysine degradation
    AMED_3840 (gabD)
   00350 Tyrosine metabolism
    AMED_3840 (gabD)
  09108 Metabolism of cofactors and vitamins
   00760 Nicotinate and nicotinamide metabolism
    AMED_3840 (gabD)
Enzymes [BR:amd01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.1  With NAD+ or NADP+ as acceptor
    1.2.1.16  succinate-semialdehyde dehydrogenase [NAD(P)+]
     AMED_3840 (gabD)
    1.2.1.20  glutarate-semialdehyde dehydrogenase
     AMED_3840 (gabD)
    1.2.1.79  succinate-semialdehyde dehydrogenase (NADP+)
     AMED_3840 (gabD)
SSDB
Motif
Pfam: Aldedh
Other DBs
NCBI-ProteinID: ADJ45619
UniProt: A0A0H3D7U0
Position
complement(4170707..4172140)
AA seq 477 aa
MSSHPEPRMLVDGRWTRGSGRETRPVENPVTGEILTELPVATIEDLDEALDAARRAFPGW
RRTSPVERSRVLREGARLIRERAGDVAMVITLELGKPLAESRAEVLLAAEHLEWAAEEAR
RGYGRVIPARDPDTLQHTVLEPVGVVAAFAPWNAPAVTPSRKIGGALAAGCSMILKPAEE
TPTAALMMAAALQEAGLPDGVLNVVFGDPPMIGRHLVTSPIVQAVTFTGSTAVGAELHAL
GAPSMTRMTMELGGHAPVLVLADADVATVARSAVPACYRNSGQVCTSPTQFLVHTDVYDR
FLTAFVDAVRARKVGDGLADGVQMGPVATGRRLQALTEMTADARARGAVVETGGERIGDI
GWFFAPTVLTSVPPDSLAGSVEPFGPLKTVTPFDDLDAALAEANRLPFGLASYAWTHDSR
AAARIAGELEAGSVALNSWRPSLPETPFGGFHLSGVGTEGGAEGLRGFQRIKYVSRS
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgagctcgcaccccgaaccccggatgctcgtcgacggccgctggacccgcggttccggg
cgggagacccgcccggtcgagaatccggttaccggcgaaatcctcaccgaattgcccgtc
gccaccatcgaggatctcgacgaggcactggacgccgcgcgccgggcgttccccggctgg
cgccggacctcgccggtcgagcggagccgcgtgctgcgcgagggcgcccggctgatccgc
gagcgggccggtgacgtcgccatggtcatcacgctggagctgggcaagccgctggccgag
tcccgcgccgaggtgctgctggccgccgagcacctcgagtgggcggccgaggaggcccgg
cgcggctacggccgggtcatcccggcccgggacccggacaccctgcagcacaccgtgctc
gagcccgtcggtgtggtggccgcgttcgcgccgtggaacgcacccgcggtgaccccgtcg
cgcaagatcggtggcgcgctggccgccggctgctcgatgatcctcaaaccggccgaagag
accccgacggcggcgctgatgatggcggcggccctgcaggaagccgggctgcccgacggc
gtgctgaacgtggtcttcggcgatccgccgatgatcgggcggcacctggtgacctcgccg
atcgtgcaagcggtgaccttcaccggatccaccgcggtcggcgccgagctgcacgcgctg
ggcgcgccgtcgatgacccggatgaccatggagctcggcggccacgccccggtgctggtg
ctcgccgacgccgacgtggcgacggtcgcccgctcggccgtcccggcctgctaccgcaac
tccggccaggtgtgcacttccccgacgcagttcctcgtccacacggacgtctacgaccgg
ttcctgaccgcgttcgtcgacgcggtccgcgcccgcaaggtcggcgacgggctggccgac
ggtgtccaaatgggacccgtcgcgaccggacggcggctccaagccttgaccgaaatgacc
gccgacgcccgggcccgtggtgccgttgtggagaccggcggagagcggatcggcgacatc
gggtggttcttcgccccgaccgtgctgacgtcggtcccgccggactcgctcgcgggctcg
gtcgagccgttcggcccgctcaagaccgtgaccccgttcgacgacctcgacgcagcactg
gccgaggccaaccggctgcccttcgggctggcgtcctacgcgtggacccacgactcccgc
gcggcggcccgcatcgccggcgagctggaagccgggtcggtggcgctcaacagctggcgg
ccgtccctgccggaaaccccgttcggcgggttccacctcagcggcgtcggcaccgagggc
ggtgccgagggcctgcgcggcttccagcggatcaagtacgtgagccgcagctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (10)   
   KEGG PATHWAY (7)   
   KEGG MODULE (3)   
Chemical substance (10)   
   KEGG COMPOUND (10)   
Chemical reaction (6)   
   KEGG ENZYME (3)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (39)   

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