KEGG   Amycolatopsis mediterranei U32: AMED_8048
Entry
AMED_8048         CDS       T01269                                 
Symbol
alkA
Name
(GenBank) adenosine deaminase/DNA-3-methyladenine glycosylase/8-oxoguanine DNA glycosylase
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
amd  Amycolatopsis mediterranei U32
Pathway
amd03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:amd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AMED_8048 (alkA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:amd03000]
    AMED_8048 (alkA)
   03400 DNA repair and recombination proteins [BR:amd03400]
    AMED_8048 (alkA)
Enzymes [BR:amd01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     AMED_8048 (alkA)
Transcription factors [BR:amd03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    AMED_8048 (alkA)
DNA repair and recombination proteins [BR:amd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     AMED_8048 (alkA)
SSDB
Motif
Pfam: AlkA_N Ada_Zn_binding HTH_18 HTH_AraC PKS_DE UBA_6
Other DBs
NCBI-ProteinID: ADJ49751
UniProt: A0A0H3DGD7
Position
8852453..8853892
AA seq 479 aa
MVTETLSLWRDAERCYRVVTARDPRFDGQFIMAVRTTGIYCRPSCPASTPKVQNVRFFPT
SAAAQANGFRACRRCLPDAVPGSPHWNVRADLAARAMRLISDGTVEREGVPGLARRLGYS
ERQLGRVLAAELGAGPLALARAHRAHSARLLIEMSELPLTDVAFAAGFSSVRQFNETIRE
VFATTPSQLRAFAASRRGRQSDVTGTRLSLRLPFRPPFDAAGLLRFFADHAVPGVEEVTA
EAYARTLRLAHGTGVVRLTPSPDHVRCELMLTDLRDLGSAVSRVRRLLDLDADPAAVTRV
LGADPALAPVVAAVPGIRVPGAVDGEELLLRALLREVPPGEEVPGEWGVRRLFPTAARIA
TAGLGETVTGVAAALAEGRLEVHVGREAAELRAELLACPGIDPSAADYVLMRVLGAPDIL
LTGDTEVRRGAEALGIAPDSLGERARSWTPWCSYAGRYLRHAAASPSLGRPATARLGRR
NT seq 1440 nt   +upstreamnt  +downstreamnt
atggtcaccgaaacgctctcactctggcgagacgccgagcgctgctaccgcgtggtcacc
gcccgcgacccgcgcttcgacggccagttcatcatggcggtccgcaccaccgggatctac
tgccgcccgtcgtgcccggcttcgacgccgaaggtgcaaaacgtccgcttcttcccgacg
tcggcggccgcgcaggccaacggcttccgcgcctgccgccgctgcctgccggacgccgtg
cccggctcgccgcactggaacgtgcgcgccgacctggccgcgcgggcgatgcgcctgatc
tccgacgggaccgtcgagcgcgaaggcgtccccggcctcgcgcggcggctcggctactcg
gaacgccagctgggccgggtgctcgccgccgagctgggcgcaggcccgctggccctggcc
cgggcgcaccgcgcgcactcggcgcggctgctcatcgagatgtccgagctgccgctgacc
gacgtcgccttcgcggcgggcttctccagcgtgcggcagttcaacgagacgatccgcgag
gtgttcgccacgacgccttcgcagcttcgtgccttcgcggcttcacgacgtggccggcag
agcgacgtgaccgggacccggctcagcctgcggctgccgttccggccgcccttcgacgct
gcggggttgcttcgcttcttcgcggaccacgcggtgccaggcgtcgaggaagtcactgcg
gaggcctacgcgcggaccctgcggctcgcccacggcaccggcgtcgtgcgattgacgcct
tcgccggaccacgtgcgctgcgagctgatgctcaccgacctgcgcgatctcggcagcgcg
gtcagccgggtgcgccggctgctcgacctcgacgccgatcccgcggcggtcacccgcgtc
ctcggcgccgatccggcgttggcgccggtggtcgcggccgtgccggggatccgggtgccg
ggcgccgtcgacggcgaggaactgctgctccgcgccctgctgcgcgaggtgcctccgggc
gaggaggtgcctggcgagtggggtgtgcgcaggctcttccccacggcagcccggatcgcg
acggccgggctcggcgaaaccgtcaccggcgtggccgccgccctggccgaaggacggctg
gaggtccacgtcggccgggaggcggccgaactgcgtgcggagctgctggcgtgcccgggg
atcgacccgtcggcagcggactacgtgttgatgcgcgttctcggcgccccggacatcctg
ctcaccggcgacaccgaggtccggcgcggtgccgaggcgctgggcatcgcacccgactca
ctcggcgagcgggcccgctcgtggacgccgtggtgttcctacgccgggaggtatctccgg
cacgcggccgcctcgcctagccttggtcgccccgccacagcacggcttgggcgacgatga

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