KEGG   Aeromonas media: B224_3129
Entry
B224_3129         CDS       T03075                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
amed  Aeromonas media
Brite
KEGG Orthology (KO) [BR:amed00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:amed02048]
    B224_3129
Enzymes [BR:amed01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     B224_3129
Prokaryotic defense system [BR:amed02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   B224_3129
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1RH-like_C DEAD ATG13
Other DBs
NCBI-ProteinID: AHX61531
Position
complement(2467847..2470978)
AA seq 1043 aa
MISVGQRERATQNRVIHLFEQKLGYRYLGDWHKRENNRNVEPELLTAWLVGRGVDAALIP
KVLRQLDRAASLGEGRILYDANKEVYRLLRYGVKEKVGAGEQNQTVWLVDWTNPQANDFA
LAEEVTVKGEHKKRPDLVLYVNGIALGVIELKRSTVSVSEGIHQNLDNQKKDFIRNFFTT
MQLVMAGNDTQGVRYGTIETHEKYYLEWKEPADPIHSDHVDLPSANLLDQHLAQLCSKAR
FLELIHDFIVFDAGTKKTCRHNQYFGIRAAKAYIRRRDGGIIWHTQGSGKSLTMVWMAKW
IRENVTDSRVLIITDRTELDEQIEKVFSGVEEEILRTKSGADLVTRLHAHNPWLICSLVH
KFGRTPEGESDDEDDGSSDDFIADMRRSLPSDFSPKGQLFVFVDECHRTQSGKLHGAMKS
LLPEALFIGFTGTPLMKQDKKKSIEVFGPYIHTYKFNEAVSDGVVLDLRYEARDIDQRVK
SQKKVDEWFDTKTKDLSRLGKQQLKQKWASMQKLLSSRSRLEQIVADILLDFERKPRLAD
GRGNAMLVCASVYQACKSYEMFSQAGFAGKCAIVTSYQPNASEIKGEETGEGLTEKLAKY
NIYRKMLADYFEQPEDEAAKRVEEFEKLVKQRFIKEPGQMRLLIVVDKLLTGFDAPSATY
LYIDKKMADHNLFQAICRVNRLDGDDKEYGYIIDYKDLFKSLEKTVNDYTAEAFAGYDKE
DVAGLLKDRLAQAKEDLDNALEAVRALCEPVKAPKSQLDYQHYFCCEPGADEETLSEKEA
LRLTLYQLVAKLIRAFTNLAGELEEAGYSASQAASIKQEVEHFAKVRDEIKLASGDLVDM
KQFEPGMRQMLDLWVDADPSETLMDFEELGLLELIIQRGPEALDGLPKEMRDNQESMAEA
IENNVRRTIVDENPVNPKYYERMSVLLDELIDLRRQQAISYQEYLEKVRELAKQVKYPQS
HSQSAYPESIDTAAKRALYDNLGKDELLVARIDTAVRYTKKADWYGDRFKEREIAFAIAE
ETKGYDVTVAEVMELVKAQQEYH
NT seq 3132 nt   +upstreamnt  +downstreamnt
atgatttcagttggccaacgggagcgggcaacccagaaccgcgtgatccatcttttcgag
cagaagctgggctatcgctatctgggggattggcataagcgggagaacaaccggaatgtc
gagcccgaactgctgaccgcttggctggtggggcggggcgtggacgcggcgctgatcccc
aaggtactcaggcaactggatcgggcagcgagcctgggcgaagggcgcatcctctatgac
gccaacaaggaggtctatcgcctgctgcgttatggcgtgaaggaaaaagtaggggcaggc
gagcaaaaccagaccgtctggcttgttgactggactaatccgcaggccaacgactttgcc
cttgccgaagaggtcacggtcaaaggcgagcataagaaacggccggatctggtgctctat
gtcaacggcattgcccttggcgtcattgagctcaagcgctctaccgtctctgtctctgaa
ggtatccaccagaacctggataaccagaagaaggattttatccgtaacttcttcaccacc
atgcagttggtgatggcgggcaacgacacccaaggggtgcgctacggcactatcgaaacc
cacgagaaatactatctggagtggaaagagccagccgatccaatccattccgaccatgtc
gatctgccgagtgccaatctgctggaccagcatctggcacagttgtgcagtaaggcgcgc
tttctggagctgatccacgactttatcgtgtttgatgcgggcaccaagaaaacctgccgc
cataaccagtatttcggcatccgtgccgccaaggcttatatccgccgccgggatggcggc
atcatctggcacacccaaggcagcggcaagagcctgaccatggtctggatggccaagtgg
atccgcgaaaatgtgaccgacagccgggtgctcatcatcaccgaccgcactgaactcgat
gagcagatcgagaaggtattcagtggggtggaagaggagatcctgcgcaccaagagcggt
gccgatctggtgacccgtctgcatgcccataacccttggcttatctgctcgctggtacac
aagttcggtcgcacgccagaaggcgagtcggatgacgaagatgatggcagctcggatgat
tttattgctgatatgcgccgcagcttgccctcggacttcagccccaaggggcagctgttt
gtgtttgtcgatgagtgccaccgcactcagtccggcaagctgcatggggcgatgaagagc
ctgttgccagaggcgctgtttatcggttttaccggcacaccgctgatgaagcaggacaaa
aaaaagtccatcgaggtctttggcccctacattcacacctacaagttcaacgaggcggtg
agtgatggcgtggtgctggatctgcgctacgaggcgcgggatatcgatcagcgggtcaaa
tcccagaaaaaagtggatgagtggttcgataccaagaccaaggatctctcgcggctgggc
aagcagcagcttaaacagaagtgggcctcaatgcagaagctgctctccagtcgttcgcgg
ctggagcagatagtggccgatattctgctcgacttcgagcgcaagccccggctggccgat
ggtcgtggcaatgccatgctggtctgcgccagcgtctatcaagcctgcaaaagttacgag
atgttcagccaggccggttttgctggcaagtgcgccatcgtcaccagttaccaacccaat
gccagcgagatcaagggcgaggagacgggcgaggggctgacggagaagctggccaagtac
aacatctatcgcaagatgctggccgactatttcgagcagccggaggatgaggcggctaag
cgggtcgaagagtttgaaaaactggtcaagcagcgttttatcaaagagccgggccagatg
cgtctgctcattgtcgtggataagctgctgaccggttttgatgccccctctgccacctac
ctctatatcgacaagaagatggctgatcacaacctgttccaggccatctgccgggtgaat
cgtctggatggtgacgacaaggagtacggctacatcatcgattacaaagacctgttcaag
tcgctggagaagacggtcaacgactatacggccgaggccttcgcaggctatgacaaggag
gatgtggccgggctgctcaaggatcgactggcccaggccaaagaggatctggataacgct
ctggaagccgtccgtgccttgtgtgagccggtgaaggcgcccaagtcgcaactcgattat
cagcattatttctgttgtgagccgggagccgatgaagagacgttgagcgagaaagaggca
ttgcggctgaccctctatcagttggtggccaagttgatccgcgcctttaccaatctggcg
ggtgagctggaggaggcgggttacagcgcctcgcaggccgcctcgattaagcaggaggtc
gaacacttcgccaaggtccgggatgagatcaagctggccagtggtgatctggtggatatg
aagcagttcgagccgggcatgcgccagatgctggatctgtgggtggatgccgatcccagc
gagacgctgatggactttgaggagctggggctgctggagctcattatccagcgcggcccc
gaggcgctggatgggttgcccaaggagatgcgcgacaatcaggagtcgatggccgaggcg
attgaaaacaacgtgcgccggaccatcgtcgatgagaacccggtcaaccccaaatactac
gagaggatgtcggtgctgctcgatgagctgatcgatctgcgccgccagcaggccatctcc
tatcaggagtatctggaaaaggtccgcgagctggccaagcaggtgaaatatccacagagc
catagccagagcgcctacccagagagcatagacacggcagccaaacgggcactctatgac
aatctgggcaaggatgagctgctggtggccaggattgataccgccgtgcgttataccaag
aaggccgattggtatggcgatcgcttcaaggagcgggagatcgcgtttgccattgccgaa
gaaaccaagggatacgatgtgaccgttgccgaggtgatggagctggtgaaagcgcagcag
gagtaccactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system