KEGG   Aeromonas media: B224_5105
Entry
B224_5105         CDS       T03075                                 
Name
(GenBank) ECF subfamily RNA polymerase sigma factor
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
amed  Aeromonas media
Brite
KEGG Orthology (KO) [BR:amed00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amed03021]
    B224_5105
Transcription machinery [BR:amed03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     B224_5105
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r4_2 Sigma70_ECF HTH_16 HTH_24 TniQ
Other DBs
NCBI-ProteinID: AHX62938
Position
complement(3994222..3994791)
AA seq 189 aa
MDNPDGDLTSLLIRVAEHGDKVAFATLFQHFAPRIRSYGMRHLGSEANALELVQETMLLV
WQKARLYHPEKGAPTTWIYTVMRNQSFDMLRRRRASKEDLCAEELWPLLEFRAEEEHLSG
GEDAVLTRQMADYLATLPEPQQQVVRGIYLQEFSQQELADRLGVPLGTIKSRLRLALQKL
KEQVEQGHD
NT seq 570 nt   +upstreamnt  +downstreamnt
atggacaacccagatggcgatctgacgtctcttctcatccgggtggccgagcacggcgac
aaggtcgctttcgccaccctgttccagcactttgcaccgcgcatccgcagttatgggatg
cgccatctcggcagcgaggccaacgccctcgagctggtgcaggagaccatgctgctggta
tggcagaaggcgcggctctatcaccccgagaagggggcgccgacgacctggatctatacc
gtcatgcgcaaccagagtttcgacatgctgcggcgccgtcgcgccagcaaggaggatctc
tgcgccgaggagctgtggcccctgctggagttcagggcggaagaggagcacctgagcggt
ggtgaagatgcggtgctgacccgccagatggcagattacctcgccaccctgccggagccg
caacagcaggtggtgcgcggcatctatctgcaggagttttcccagcaggagctggccgac
aggctaggcgtgccgctcgggaccatcaagtcccgcctccggctggcattacagaaactg
aaagagcaagtggagcaaggccatgattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (13)   

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