KEGG   Astyanax mexicanus (Mexican tetra): 103023186
Entry
103023186         CDS       T05042                                 
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
  KO
K13126  polyadenylate-binding protein
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03015  mRNA surveillance pathway
amex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103023186 (pabpc1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103023186 (pabpc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amex03019]
    103023186 (pabpc1)
   03041 Spliceosome [BR:amex03041]
    103023186 (pabpc1)
Messenger RNA biogenesis [BR:amex03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103023186 (pabpc1)
   mRNA cycle factors
    Stress granule specific factors
     103023186 (pabpc1)
Spliceosome [BR:amex03041]
 Complex C
  Other components
   Complex C specific factors
    103023186 (pabpc1)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_3 RRM_occluded YflT
Other DBs
NCBI-GeneID: 103023186
NCBI-ProteinID: XP_007230879
Ensembl: ENSAMXG00000008599
UniProt: A0A8B9H072
Position
23:complement(11644092..11652892)
AA seq 634 aa
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDEKLKEVFSKYGNSMSIRVMTDDSGKSRGFGFVSFER
HEDAQKAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQNMPATMRPSAPRPQTFGAMRPPSQVPRMMSAQ
RVAAQTMGPRPATAAAAAAAAPVRSVPQYKYAAGVRNPQQHMNTQPQVSMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPTLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKNVTNSAGVPTV
NT seq 1905 nt   +upstreamnt  +downstreamnt
atgaaccccagcgctcccagctacccgatggcctccctgtacgtcggggatctccaccag
gatgtgaccgaggccatgctgtatgagaagttcagcccggctggggcgatcctctccatc
cgcgtctgccgagacatgatcacacgccgctcgctcggctacgcctacgtcaacttccag
cagccggcagacgctgagcgtgctttggacaccatgaactttgatgtgatcaaaggcagg
cctgttcgcattatgtggtctcaacgcgacccctcactgaggaaaagtggagttggcaac
atctttatcaagaacttggacaaatctattgacaacaaggccctttacgacaccttttct
gcttttggaaacatcttatcctgcaaggtggtttgtgatgagaatggctcaaaaggttac
ggctttgtgcactttgagacccaggaggccgccgaaagggccattgagaaaatgaacggc
atgttactcaatgacagaaaagtgtttgtggggcgcttcaaatctcgcaaagaacgcgag
gctgagcttggagccagagccaaggaattcaccaatgtctacatcaaaaattttggagaa
gacatggatgatgagaaacttaaggaggtcttcagcaaatatggcaattctatgagtatc
cgtgtgatgactgacgacagtggcaaatccagaggctttggctttgtcagctttgaaagg
catgaagatgctcaaaaggctgtagatgagatgaatggaaaagagctcaatgggaagcta
atctacgtcggccgtgctcagaagaaggtggagcgtcagactgaactgaagcgcaagttt
gagcagatgaagcaggatcgtatgactcgttaccagggtgtcaatctttacgtgaagaac
ctggacgatggcattgatgacgaacgtctccgcaaagagttttcaccttttggaaccatc
accagtgccaaggttatgatggacggaggtcgcagtaaaggattcggattcgtctgcttt
tcctctcctgaggaggccactaaggctgtaacagagatgaacgggcgaattgttgccaca
aagccactgtatgttgctctggctcagcgtaaagaggagcgtcaggctcaccttaccaac
cagtacatgcagaggatggccagcgtccgtgcagttcccaaccctgttctcaacccgtac
cagcctgccccaccatccggatacttcatggctgccattccacaggcccaaaacagagct
gcgtactatcctacaagtcagctggcccagcttcgaccaagcccacgctgggctacccag
ggtgtccgacctcaacacttccagaacatgccagccaccatgcgcccatcagctccaaga
cctcagacgttcggtgcgatgcggcctccctcacaggtgccccgcatgatgtccgctcag
cgtgttgctgcacagacaatgggtccacggcctgcaacagctgcagccgctgctgccgca
gctccggtgcgcagtgtgccacagtacaaatacgcagcaggagtgcgcaacccccagcag
cacatgaacacacagcctcaggtctcaatgcagcagcctgctgtgcacgtgcagggacag
gagcctctcacagcctccatgttggctgctgcacctccacaggagcagaagcagatgctg
ggtgaacgcctcttcccacttattcagaacatgcatccgactctggccggcaagatcaca
ggcatgctgctggagattgacaactccgagctgctgcacatgctggagtctcctgaatct
ctgcgctccaaggttgatgaggcagtcgctgtgctccaggctcatcaggctaaagaagcc
gctcagaaaaatgtaaccaactctgctggtgtgccaaccgtctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (58)   

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