KEGG   Astyanax mexicanus (Mexican tetra): 103023852
Entry
103023852         CDS       T05042                                 
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03030  DNA replication
amex03410  Base excision repair
amex03420  Nucleotide excision repair
amex03430  Mismatch repair
amex03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103023852 (pold1)
   03410 Base excision repair
    103023852 (pold1)
   03420 Nucleotide excision repair
    103023852 (pold1)
   03430 Mismatch repair
    103023852 (pold1)
   03440 Homologous recombination
    103023852 (pold1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amex03032]
    103023852 (pold1)
   03400 DNA repair and recombination proteins [BR:amex03400]
    103023852 (pold1)
Enzymes [BR:amex01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     103023852 (pold1)
DNA replication proteins [BR:amex03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    103023852 (pold1)
DNA repair and recombination proteins [BR:amex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      103023852 (pold1)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     103023852 (pold1)
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol DNA_pol_B_exo2 DNA_pol_B_2 divDNApol
Other DBs
NCBI-GeneID: 103023852
NCBI-ProteinID: XP_007256346
Ensembl: ENSAMXG00000000544
UniProt: A0A8B9LMF5
Position
2:complement(4580951..4605193)
AA seq 1105 aa
MDGKKRNGGPTLGGASQTKKGRVGTDWDDGPSHFEEELALFDEMEMDAESGEGQAGHDVI
PVGDLFSADLNPRWRRPTAPTIKPDKDTLIFQQIDLDYYLGSAVAGMPGQVQGKVPVVRM
FGVTDNGNSVCCHVHGFAPYFYVPAPAGFTAAHLSEFQKELNSAVLKDMRSNKDNISVTV
LAVDMTRKENMYGYHGSRPLDFLRITMAMPRLVAPAKRLLEQGFKFANFSTQSYSPYEAN
IDFEIRFMVDCDVVGCCWIELPKGKYKLREERTTKDTDSRHPGKVSLCQYEVDVGWNDLI
SHPAEGEWQRIAPLRVLSFDIECAGRKGVFPEAEVDPVIQIASMVQRQGEKEPFIRTVFT
LQSCASIVGSQILCFTQEKQLLQSWAEFVRTVDPDIITGYNIQNFDLPYLLNRAAALKVN
LFPYLGRVRGIKSILKDSSFQSKQMGRRENKTVNMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSI
PIATLDFSSLYPSIMMAHNLCYTTLLQKGQADKLGLSAEDFIRTPTGDLFVKSSVRKGLL
PEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTIANGYKADAKVVYGDTDSVMVKLGVDTVQEAMTVGR
EAAEWVSSHFVPPIKLEFEKVYHPYLLINKKRYAGLYFSSSAEHHDKMDCKGIETVRRDN
CPLVANLINTCLQKILIDRDPDGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
RQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQY
YLEQQLSKPLMRIFEPILGESKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRSTCIGCR
AVLKTDAAVCDFCKKKESELYQKEIAHLSALEEKFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQGKLVSRFGW
NT seq 3318 nt   +upstreamnt  +downstreamnt
atggatgggaaaaagcgcaatggtgggcctacactgggtggagcctcccagactaagaaa
ggccgagtgggtacagattgggacgatggaccttcccattttgaggaggagcttgcttta
tttgatgaaatggagatggatgcagagtcaggggagggacaggcgggtcatgatgtaatt
ccagtgggtgacttgttctcggctgatctaaaccctcgctggcggcgtcccacagctcct
actatcaaacctgacaaagacaccctcatctttcagcaaatagatttggactattacctg
ggttctgcagtggctgggatgccaggacaggtccaggggaaagttccagtggtccgtatg
tttggagtgaccgataatgggaacagtgtttgctgtcatgtgcatggctttgcgccttac
ttttatgttcctgctcccgctggttttactgctgctcacctgtctgagtttcagaaagag
ctgaactctgctgtgttgaaggacatgcgttccaacaaagacaacatatctgtcactgtg
ctggcagtggacatgacccgcaaagagaatatgtatggttaccatggaagccgtcctttg
gacttcctgcggattaccatggcaatgcctcgtctggttgccccggcgaagcgcctgttg
gagcagggctttaagtttgcgaacttctccacacagagttactctccctatgaggccaat
attgactttgagatcaggttcatggtggactgcgacgtggtgggctgctgctggattgag
ctgcctaaaggaaaatacaaactgagagaagaaagaactacaaaagacacagactcccgc
cacccaggaaaggtttctctctgtcagtatgaggtggatgtgggatggaacgatttgatc
agtcacccagcagaaggagaatggcagagaattgctcctcttagggttctgagctttgat
attgagtgtgctggcaggaaaggtgtgtttccagaggcagaggtggacccggtgattcag
attgcctccatggtgcagcgtcaaggagagaaggagccctttatacgcactgttttcact
ttgcagagctgtgctagcatagtgggctctcaaatcctttgctttacacaagagaagcaa
ctactacagagctgggcagagtttgtgaggacagtggatcctgatatcatcacaggctac
aatattcagaactttgacctgccatacttgctcaacagagctgctgctctaaaggtgaat
ctgttcccgtatctgggacgagtgaggggcatcaagtctattctgaaggactccagcttc
cagagcaaacagatgggccgcagagaaaacaaaactgtcaacatggagggaagagtgcag
tttgatctcttgcaggttctcctgagggactataaactgcgctcctacactctgaatgca
gtcagtttccacttcctgcaggagcagaaggaagatgttcaacactccattattactgac
ctgcagaatgggaatgagcagacgaggcggcgtttggcggtatactgtctgaaggatgcc
tacctgcccctgcgtctgctgcagaagctgatgtgtgtgatcaactacatggagatggcc
agagtaaccggtgtgcctctgacttacttgctctcccgtggacagcagattaaagtggtg
tcccagctgctgagacaggctatgaagcaggacctggtcatgccggtggtgaagactgag
ggaggtgaagactacacaggagccactgttattgagccagagaaagggtattacagcatt
cctatagctactctggatttctcctccctgtacccatcgattatgatggcacataacctg
tgttacactaccctgcttcagaaaggccaagcagacaagctgggtctttctgcagaagac
ttcattaggacccctacaggagatctgtttgtgaaaagctcagtgaggaagggccttctg
cctgaaatcctggagaacctgctgagtgccaggaagagggcgaaggctgagctgaagaag
gagacggacccttttaagaagcaggtgctggacggcaggcagctcgctctgaagatcagc
gcaaactctgtgtacggtttcactggggcacaagtgggcaaactaccctgcctggagatc
tcacagagtgtgactggttttggaaggcagatgattgagcagactaaacagcttgtggaa
tccaaatacaccatcgctaacggctataaggctgatgctaaggtggtttacggagacacg
gactctgttatggtgaaactgggtgtggacacggtgcaggaggccatgactgtggggaga
gaggcagctgaatgggtgtcttcccactttgttccaccaatcaagctggagtttgagaag
gtgtaccacccatacctgctgatcaataagaagaggtatgctggactgtacttctcctcc
agtgcggagcatcatgataagatggactgcaagggcattgaaaccgtcagacgagacaac
tgccccctagtggccaacctcattaacacatgccttcaaaagatcctcatagacagagac
cctgatggagctgtggctcatgcaaaagaggtgatctcagacctcctatgtaaccggatt
gacatcagtcagcttgtgatcactaaggagctgacgcgcacagcgcaggagtacgcaggc
agacaggctcatgtcgaactcgctgagaggatgcgcaagagagatgcaggcagcgcccct
aatcttggagatcgagttccgtacgttatcatcaaagcagctaaaggagtagcagcatac
atgaagtctgaggaccccatttatgtgctggaaaacaacatccccattgacactcagtac
tacctggagcagcagctgtctaaacccttaatgcgaatctttgagcccatattgggagag
tctaaggctgagagcgttttgctcaagggagatcacacacgctgtaagactgttctgacc
tccagggtgggtggtctcatggcgtttgcccagaaacgcagcacctgcattggctgcaga
gctgttctcaaaacggatgctgctgtttgcgatttctgcaagaagaaggagtcggagctc
tatcagaaagagattgctcatctctcagctttggaggagaagttttctcggctttggact
cagtgccaacgttgccaaggatcgctgcatgaagatgtgctgtgtaccagccgagactgc
cccatcttctacatgaggaagaaggttcagaaagaccttgacgaccagggaaagcttgtg
tcccgtttcggctggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (44)   

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