KEGG   Astyanax mexicanus (Mexican tetra): 103029398
Entry
103029398         CDS       T05042                                 
Symbol
tsen2
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2 isoform X1
  KO
K15322  tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:amex00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:amex03016]
    103029398 (tsen2)
Enzymes [BR:amex01000]
 4. Lyases
  4.6  Phosphorus-oxygen lyases
   4.6.1  Phosphorus-oxygen lyases (only sub-subclass identified to date)
    4.6.1.16  tRNA-intron lyase
     103029398 (tsen2)
Transfer RNA biogenesis [BR:amex03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing endonuclease complex
    103029398 (tsen2)
SSDB
Motif
Pfam: tRNA_int_endo tRNA_int_endo_N
Other DBs
NCBI-GeneID: 103029398
NCBI-ProteinID: XP_007229690
Ensembl: ENSAMXG00000005732
UniProt: A0A8B9JLS0
Position
22:complement(13062799..13076742)
AA seq 477 aa
MEAVFQAPKRRPKVYESFESPLPVPFTSVQGTSSLQEALICKAEIINQHVIVREADHIQA
LYGKGYFGKGVLSKSRPEHSISERWEYIGNECLPVIPLSRYQKLVSWAHSALLAQGLDEE
VISETMQKLTQPIELNLREEHGAEHDNEPINNKKHQEMAASQTQSCDNFSQDQSMENEIA
AEGLNDDRMDSESSEAEKPRRQGDPMYDPLAELYPQEPEQVDPNALAKVKCKRHDDWIIH
CGCRLDESQMTSVLVQSGKESGSCLVHGYVLVEEPDEEDNGDPNEDDISCVRMAKLVCRI
NPFNMVEHLQLSYEEAFFLVYALGCLSIYYDGEALSVLQLWRMFCSVQPNFETNYAAYHY
FRSKGWVPKPGIKYGTDLMLYRKGPPFYHASYSVVVEKVDDSFQGATLRPFSWRSFAAIS
RITGNVSKELMLCYVIVPSDMNKEDLSSPEFLKRVKVQEVIVSRWISSRERMEQDEI
NT seq 1434 nt   +upstreamnt  +downstreamnt
atggaagcggtgttccaggctccaaaacggagaccaaaagtttacgaatcatttgagagc
ccactgcccgttccttttacctcagtccaaggcacttcctcacttcaggaggccctcata
tgcaaagccgagatcataaaccagcacgttatagtacgagaagctgaccacattcaagca
ctgtatggaaagggttattttggtaaaggagttctgtcaaaaagcagaccagagcacagt
atttcagaacggtgggaatacataggcaacgaatgtttacctgttatccccttgtcaaga
taccaaaaacttgtgagctgggcccattctgctctcctggctcaggggttagatgaagag
gttatcagcgagaccatgcaaaagctgacacaaccaattgaacttaatttaagagaagaa
catggagcagaacatgataatgagccaattaacaataaaaaacatcaagagatggcagct
tctcagacacagtcttgtgataacttcagtcaggatcagtcgatggagaatgagatagct
gcagagggtctaaatgatgacagaatggactcggaaagttctgaggctgagaaacctcgt
agacagggagatccaatgtatgatcctctagctgaactctatcctcaagaacctgagcag
gtggatccgaatgcactagccaaagtgaagtgcaaaaggcacgacgactggatcattcac
tgtggatgtagactggacgagagccaaatgacgagtgttctggtccagtcgggcaaagaa
agtgggtcatgtctagtgcatggatatgttctagtggaggaacctgatgaagaagataat
ggggatcctaatgaggatgacatctcatgtgtcagaatggctaagctggtttgcagaatc
aacccctttaacatggtggaacatctccagcttagttacgaagaggctttctttctggtt
tatgcactggggtgcttgtcaatttactacgatggtgaagccctgtcagttcttcagctt
tggcgaatgttttgttcagtgcagcccaactttgagactaattacgccgcctatcactac
ttccgcagtaaaggatgggtacccaagcctgggattaaatatggaacagatttaatgctg
tatcggaaaggaccaccattttatcatgcaagctactctgtggtggtggagaaagtggac
gactcctttcagggtgctactctgagacccttcagttggaggtcgtttgctgccatcagt
agaataactggtaacgtctcaaaagagctgatgctgtgttacgttattgtcccatcagat
atgaacaaagaagatctctcctcaccagagttcctcaaaagagtcaaagttcaggaggtc
attgtcagcaggtggatatcttctcgagaacgaatggaacaggacgaaatttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (2)   
   Pfam (2)   
All databases (39)   

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