KEGG   Astyanax mexicanus (Mexican tetra): 103032086
Entry
103032086         CDS       T05042                                 
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03018  RNA degradation
amex03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103032086 (lsm7)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103032086 (lsm7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amex03019]
    103032086 (lsm7)
   03041 Spliceosome [BR:amex03041]
    103032086 (lsm7)
Messenger RNA biogenesis [BR:amex03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103032086 (lsm7)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103032086 (lsm7)
Spliceosome [BR:amex03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103032086 (lsm7)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 103032086
NCBI-ProteinID: XP_015457735
Ensembl: ENSAMXG00000015664
UniProt: A0A3B1JHV5
Position
5:24468438..24470500
AA seq 103 aa
MADKEKKKKESIFDLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QYKLTEDTRQLGLVVCRGTAVVLICPQDGMEAIPNPFIQQQDG
NT seq 312 nt   +upstreamnt  +downstreamnt
atggcggataaagagaagaaaaagaaggagagcatattcgacttgtcaaaatacattgac
aaaccaatcagagtaaaattccagggtggtcgtgaggccagtggtgtcctaaaggggttt
gatcctctgttaaacttggtgttggatggcacaattgaatacatgcgtgatcctgatgac
cagtacaagctgacggaagacaccagacagctcggcctggtggtctgtcgggggacagca
gtcgtgctgatctgcccgcaggacggcatggaggctattcccaaccccttcatacagcag
caggatggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (22)   

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