KEGG   Astyanax mexicanus (Mexican tetra): 103033684
Entry
103033684         CDS       T05042                                 
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103033684 (parn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amex03019]
    103033684 (parn)
Enzymes [BR:amex01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     103033684 (parn)
Messenger RNA biogenesis [BR:amex03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103033684 (parn)
SSDB
Motif
Pfam: CAF1 RNA_bind R3H NCBP3 RRM_1 FMP23
Other DBs
NCBI-GeneID: 103033684
NCBI-ProteinID: XP_022530134
Position
12:complement(294597..311109)
AA seq 643 aa
MEITRQNFKESLSTVYSAVEEADFLAIDGEFSGISDGPSVSALTNGMDTPEERYGKLRKH
SMDFLLFQFGLCTFRYDQTQAKYLTKSFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFRSGIPYLNQEEESQLREQYEEKRNQMNGSGTPSYISPSSGKAAVNVPDEHKDF
ISRVVEKVEALLSNSEKTVDLEPCSGFQRKLIYQTLNWKFPKGLHIETVETEKKERFIQV
SKVDEEERRRMEQQKQEREQEELNDAVGFSRVVHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEELEDFKEVTMCVFPRLLDTKLMASTQPFKDLITNTSLAELEKQLKEKPFKAPKVD
CCEGFQCYDTASEQLHEAGYDAYITGLCFISMANYLGTFLTPPKPHISARSKLIEPFYNK
LFLMRVIDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQVEQVQIAMNTSQYAESYRIQTYAEYMQSKHKHTHTNRKWGEDGWANTSYRSVTG
KRSISPTQEDQSSDFSGVADSNWSHYSKKIKTDAGASGGGVQTYAEAVDSTTGSWLKAQP
EKGAASQEASGSEEADAWPKLPTNQNQGSQPTSTGLFDVPQVW
NT seq 1932 nt   +upstreamnt  +downstreamnt
atggagataacgcgacaaaattttaaggagagtctgagcaccgtgtacagcgctgtggag
gaggcagactttctagccattgatggagaattttcaggaatcagtgacggcccctcggtc
agcgctctgaccaatggcatggacacgcctgaggagcgctatgggaagctcaggaagcac
tccatggacttcctgctctttcagttcggcctctgcacgttcagatatgaccagactcag
gccaagtatcttacgaagtcttttaatttttatattttcccgaagccgttcagcagaaca
tccccagatattaaattcatctgtcagagctccagtatagattttctggccagtcagggc
tttgacttcaacaaagtgttccgcagcgggatcccgtatctgaatcaggaggaggagtct
cagctgagggagcagtacgaggagaagaggaaccagatgaacggatctggaaccccgtcc
tacatctccccgtcctccggtaaagcggcggtgaacgtcccggacgaacacaaggacttc
atcagcagagtcgtggagaaggtggaggctctgctgagtaactctgagaagactgtggat
ctggagccgtgctctgggttccagaggaagctgatctatcagactctgaactggaagttc
cccaaaggtctccatatagaaacggtagaaactgagaagaaggagcgttttatccaggtg
agtaaggtggatgaagaggagaggaggaggatggagcagcagaagcaggagagagaacag
gaggagctgaacgatgctgtgggattctccagagtcgttcacgcgatctctaaatccggg
aagctggtggtgggccataacatgctgctggatgtgatgcacaccatccatcagttctac
tgccccctacctgaggagttggaggattttaaggaggtgacgatgtgtgtgtttcccagg
cttttggatacaaagctgatggcgtcaacacagccgtttaaggatctgattacgaacacg
tctctggcggagttggagaagcagctgaaggagaaaccgtttaaagctccgaaagtcgat
tgttgtgaggggttccagtgttacgatactgcatctgagcagcttcatgaagccggatac
gacgcctacatcaccggactctgcttcatctccatggccaattacctgggaaccttcctc
accccgcccaaacctcacatctccgctcgctccaaactcatagaacccttctacaacaaa
ttgttcctcatgagggttattgatatcccgtacctgaacatcagtggaccagacttgcag
ccgaagagagatcacgttctgtacgttacgtttccgaaagagtggaagaccagcgacctc
taccagctcttcagcgctttcggtaatattcaggtgtcctggattgacgacacgtctgcg
ttcgtttccctcagtcaggtggagcaggtgcagatcgcgatgaacacgagtcagtatgcg
gagagctaccggatccagacctacgccgagtacatgcagtccaaacacaaacacacccac
accaacaggaagtggggggaggacggctgggccaacacctcctacaggtcggtgactgga
aagagaagcatcagccccactcaggaagatcaaagctctgatttcagcggtgttgctgat
agcaactggagtcactattcaaagaagatcaaaacagatgcaggggcaagtggtggcggt
gtgcagacgtacgctgaagccgtagactcgacgacgggcagttggcttaaagctcagcca
gaaaaaggcgcagcaagccaggaagcatcggggtccgaggaagcagatgcctggccaaag
ctcccgaccaatcagaatcaaggttctcagcccacgtctacaggactctttgacgttcct
caagtttggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (52)   

Download RDF
DBGET integrated database retrieval system