KEGG   Astyanax mexicanus (Mexican tetra): 103036067
Entry
103036067         CDS       T05042                                 
Symbol
vps54
Name
(RefSeq) vacuolar protein sorting-associated protein 54 isoform X1
  KO
K17600  vacuolar protein sorting-associated protein 54
Organism
amex  Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:amex00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:amex01009]
    103036067 (vps54)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:amex04131]
    103036067 (vps54)
Protein phosphatases and associated proteins [BR:amex01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     103036067 (vps54)
Membrane trafficking [BR:amex04131]
 Endosome - Golgi transport
  Tethering complex
   GARP complex
    103036067 (vps54)
SSDB
Motif
Pfam: Vps54 Vps54_N FeoB_Cyto YqzH
Other DBs
NCBI-GeneID: 103036067
NCBI-ProteinID: XP_022530210
Position
12:2308299..2328262
AA seq 1007 aa
MASGPGSSPVAQASAGSSGPDGFFRKPREAAGSSRHYRPPRSLPDVCPKEPTGEARGLCE
GPSVVADQHRWTVYNSKVNLPAALNDPRLAKRESDFFTKTWGLDFTETEVMPSFYLPNIT
AEHFSEYLQETAQREKIHERCKNICPNKDDLSVPNITNNHDKAKEELEQVPKIFMRPDFV
LNDPATFNTVLPWSHFSVAGGKNSRDGASSRLLQEKLSHYLDVVEVSIARQISLRSEAFF
HAMSSQHELQDRLRETAVAVATLRARTAVMDRVMCRGPLQALKDTVTRSNCAKLHGKLKL
MAAVQQTQPTVQLLLSTSEFVGALELIATTKEVLQQELQGIHSFRHLGSQLCEMEKLIDK
MIVADFTTYSRSDLNRSFEDDSQVLEKVPNHKPANEKDRLQSLVFGLLRQRKLDFLDIYS
EEMMQAAKGIVRQCVLRSVSQIEDMDTDTVVKLQDQMRLMKFSQWFELLQNVFEHFVLFL
TRIKATLSVIRNVVLEVLDSCQRSRMADSSSAIADGNCGENEDEDEEDSGGSSLRPGEAE
LAYLTHEGLFISDALNEAERRSSTAAPSKTQTQTRAETSGSDSASGTTESSSSREQTTNT
ASSLPTGGTTSIEDLMPSDLELGRVANNIQELLYTASDISHDRCVKVLLAKAKDCSLERL
SSAEFVCVSRAVEGFVKETEALCSRRSVSLRGALQSQANRFVHRFHEERKTKLSLLLDNE
RWKQAEVPAEFQHLVDSIADGHITLPERKPAGTEEKKPSDFLLVDGQKYAVVGTVLLLIR
IFLEYCQCVNDIPSITTDMLTRLADLLKHFNSRSCQLVLGAGALQVVGLKTITTKNLALV
SRCLQLVVHYIPIIRAHFETKLQPKQYSILRHFDHITKDYNDHIAEISAKLVAIMDGLFE
RVLSKYEVKAPMPSLCFRNVCKQMAKMHEAIHDLLPEEQTQMLFLRINTSFKMHLKRQLS
RLGVINDGGPQQGLVVVDVAFYTENVQALRSLERLDLNMPEIWEQKR
NT seq 3024 nt   +upstreamnt  +downstreamnt
atggcgtctggaccgggctcgtcgccggtggcccaggccagcgcgggcagcagcggccct
gatggattcttccggaagcccagagaggcggccggttcctccagacactacagaccccct
cgctctctccctgacgtctgtcccaaggagcccaccggggaagcccgggggctgtgtgag
ggtccgtcggtggtggcggatcagcaccggtggacggtgtataactctaaagtgaacctg
ccggccgccctaaacgacccgcgcctcgccaaacgcgagtctgacttcttcaccaagacc
tgggggctggacttcaccgagaccgaggtgatgccttcattctacctgcccaacataacg
gccgagcacttcagcgagtacctgcaggagaccgctcagagggagaaaatccacgagagg
tgtaagaacatttgtcccaataaagacgatctgtccgtgcccaacatcacaaacaaccac
gataaagccaaagaagagcttgagcaggtgcctaagatcttcatgaggccggacttcgtg
ctgaacgaccccgccacattcaacactgtgttaccgtggtctcacttcagcgttgccggg
gggaagaacagtcgagatggtgcgtcgtcacggttactgcaggaaaagttgagtcactat
ctggatgtggtggaggtcagcatcgcccggcagatctctctgcgctccgaggcgtttttc
cacgccatgtcctcccagcacgagctgcaggaccggctgcgggagacggcggtcgccgtg
gcgacgctgagggcccggacggcggtgatggaccgggtgatgtgccgggggccgctccag
gctctgaaggacacggtgacccgcagtaactgtgccaagctgcacggaaagctgaagctg
atggcggctgtgcagcagacgcagcccaccgtgcagttactgctctccacctccgagttc
gtgggggcgctagagctcatcgccaccaccaaggaggtgctgcagcaggagctacagggc
atacacagcttcaggcacctgggctctcagctgtgtgagatggagaagctgattgataaa
atgattgtggctgattttactacctattccagaagtgacctcaaccgctcctttgaggac
gacagccaagtgttggaaaaggttccaaaccacaaaccggcgaatgagaaggaccgtctc
cagtctctggtgtttggtttactgaggcagaggaagctggatttcctggatatttacagt
gaggagatgatgcaggcagctaaaggcatcgtcaggcagtgtgtgttgagatccgtgtct
cagattgaggacatggacacagacactgtggtaaagctgcaggatcagatgaggttgatg
aagttctctcagtggtttgagttgctgcagaacgtcttcgagcattttgttctcttcctc
accagaatcaaggccactctcagcgtgatccgtaacgtagttctggaagtgctggacagt
tgtcagaggagccgcatggccgactcttcttctgcgattgccgacgggaactgtggtgag
aatgaagacgaggatgaggaggattccggaggctcgagtcttcgtcccggagaggcggag
cttgcgtatctcacacacgaggggctgttcatcagcgatgcattaaatgaagcagagcgg
cgcagcagcacagccgcaccgtcaaaaacgcaaacgcaaacccgagcggagacgtccggg
agcgactcggcctcgggaaccacagagtcttcatccagcagagagcagaccactaacact
gcctcctccctgcccacagggggcaccacctccattgaggatctgatgccgtctgatctg
gaactgggccgagtggccaacaacatccaggagctcctctacaccgcctccgacatcagc
cacgaccgctgtgttaaagtcctgctggctaaagccaaggactgttctctggagcgtctg
agctcggcggagtttgtgtgtgtgagccgggcggtggagggcttcgtgaaggagacggag
gctctgtgcagcagacgcagcgtcagcctgaggggggcgctgcagagccaggccaaccgc
ttcgtccaccgcttccacgaggagcgcaaaaccaagctcagtctgctgctggacaatgag
agatggaagcaggctgaggttccggctgagtttcagcacctggtcgactccatcgcagac
ggacacatcacactgcctgaacgcaaacctgcaggaacggaagaaaagaagcccagtgac
ttcctgctggttgacgggcagaagtatgcggttgtcgggacggtgctgctgctgatccgg
atctttctggaatactgccagtgtgtgaacgacatcccgtccatcaccactgacatgctc
acacgcctcgcagatctactcaagcacttcaactcgcggagctgtcagctggttcttggg
gccggagctctgcaggtggtggggctcaaaaccatcaccaccaagaacctggctctcgtg
tctcgctgtctgcagctggttgttcactacatccccatcattagagcacacttcgagacc
aaactgcagcccaaacagtacagcatcctgcgccactttgaccacatcaccaaggactat
aacgaccacattgctgagatctcagctaaacttgtggccattatggacggcctgtttgaa
agagtgctatcaaagtatgaagtgaaagccccgatgccgtcgctgtgttttcgtaatgtc
tgcaagcaaatggccaaaatgcacgaggccatccacgatctcctacctgaggagcagaca
cagatgttgtttctgcggatcaacacaagctttaagatgcacctgaagaggcagctctct
cgactgggggtcataaacgatggtggtcctcagcaagggctggtggtggttgacgtggcc
ttctacacagagaacgttcaggcgctgcgctcgctggagcgtttggacttaaacatgcca
gagatctgggagcagaagaggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (32)   

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