KEGG   Astyanax mexicanus (Mexican tetra): 103042128
Entry
103042128         CDS       T05042                                 
Symbol
sympk
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
  KO
K06100  symplekin
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03015  mRNA surveillance pathway
amex04530  Tight junction
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103042128 (sympk)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    103042128 (sympk)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amex03021]
    103042128 (sympk)
   03019 Messenger RNA biogenesis [BR:amex03019]
    103042128 (sympk)
Transcription machinery [BR:amex03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     103042128 (sympk)
Messenger RNA biogenesis [BR:amex03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     103042128 (sympk)
    U7-dependent histone pre-mRNA processing factors
     103042128 (sympk)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N Adaptin_N Cnd1
Other DBs
NCBI-GeneID: 103042128
NCBI-ProteinID: XP_007260420
Ensembl: ENSAMXG00000013677
Position
3:complement(11638731..11650550)
AA seq 1240 aa
MASGSGERNFTGSEEAAIDMTTSEKVVDLLNQAAFMSTDDKLTALKQVQELIINKDPSLL
DNFLDEMIAFQTDKSIEVRKFVIGFIEEACKRDNELLLKLIANLNMLLKDESVNVVKKAI
LTLTHLYKVSLQWLVQSKSVSEMQEACWNMVTQMKEEVLALLDSDNDGVRTHAIKFTESL
IIALSPRKPDSDVPKKQEGDISLDKIPKDHSYIRYDVLCEEGKSALEQLLKFMVHPAISS
INLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVSVLR
HPSSVDFHSQISTLLQDLGMAQSEIARCVPAAAQPRKRSRHEPYSEGKRIKIEPALIEDD
EDKEEPAPVVAPKPSTTTGTQSAIDLTADFIRPLLTPENVANLVLISMVYLPEVMPASFQ
ATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGLEQCKARGEEGKEGEGEASMEESSSK
DPLIIRKVSAVSLGQAISVVGAYKSQPAEETPQAKKLPEPILPSTQSKAPGSSGRKKVFR
LADVVQPLSDSQLEKLTNMAVKRILQAEKAIARSGMSHVRVKLLARLMTQFEGTMKDDML
RFILEDMRTRSDLAFSLLYQEYNQYLSQLPSGSLDSYEHCLFSLLSGLQERPEQRDGLFT
KLVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELILKRPSRQFQYLHVLLDLSSHDK
EKVRSTALTFIKRMYEKDHLREYIEKFALNYMQLLVHPNPPSLLFGVGEDTEVASPWTEE
TVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMNSPDLLLLV
ENCPKGAETLVTRCLHILTDKVPPSPDLVERVRDLYHKRVPDVRFLIPVINGLEKKEVIQ
ALPKLIKLNPIVVKEVFNRLLGTQHSEGSPSMSPLTPGELLIALHNIDSTKCDMKSIIKA
TNLCFGEKNVYTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIL
KQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLISVFERCPEMREPLLQHVRSFTPH
QQAHIPSSIMAILEASSRMQEPEPQREPEHMEAMEEREMHPQQVMMPVAQAEAPAPSVTA
VHETVPPQSGSIKREEEEPMEEGEADLERLQVVSEATTQQIEALKSEPGTASVPQEKAEE
PMETFTKSADAADQPQEEVDSVAEPETPAGEAERSREEED
NT seq 3723 nt   +upstreamnt  +downstreamnt
atggcgtcaggctctggagaaaggaactttactggatcggaggaagcagccatcgatatg
accaccagtgaaaaggtagtggaccttttgaaccaggctgcttttatgtccactgatgat
aaacttactgcacttaagcaggtgcaggagttgattattaacaaagatccatcattactt
gataatttcctggatgagatgattgcgtttcagacagacaagtcaattgaagtgcggaaa
tttgttattggcttcatcgaggaggcgtgtaaacgggataatgagctgttgctgaagctg
attgcgaatctgaacatgctgctgaaggatgagagtgtgaatgttgtgaagaaggccatc
ctcacactcactcatctttacaaagtgtctctacagtggttggtgcagtcaaagagtgta
tctgaaatgcaagaggcatgctggaatatggtgacccagatgaaggaagaggttctggct
ctgctagattcagacaatgacggcgttcgcacccatgccatcaaatttactgaatccctc
ataatcgccctatcaccacggaaaccagactcagatgtacccaagaagcaagagggggac
atcagccttgacaaaattccaaaagatcactcgtacattcgctatgatgttctttgtgaa
gaggggaagtctgctttagagcagctcctcaagttcatggtgcacccagccatttccagc
attaatctcaccacagctttgggatcactggccacgctggcccggcaaaggcccatgttc
atgtcagaggttgtacaagcctatgagactcttcatgccaacctgcccccaactctggcc
aagagtcaagtgagcagtgtgcgaaagaacctcaaactgcacctagtgtctgtgttgcgg
caccctagcagtgtggacttccacagccagatctccacgctgctgcaggaccttggtatg
gctcagagtgaaatcgcacgctgtgtacctgctgctgcgcaacctcgcaagagatcccgc
catgagccctacagtgagggcaagaggatcaagattgaacccgcgctgattgaggatgat
gaggataaggaagagccagcccctgttgttgcccccaagccttcaaccaccacaggcact
cagtctgccatagacctcactgctgacttcatacggcctctgctaacaccggaaaatgtg
gccaacctggtactcattagtatggtttacctaccagaagtcatgccagcctcctttcag
gctacctatacacctgtggagtcagcaggcacagatgcccagattaaacatttggccagg
ctcatggctacgcagatgactgcagctggccttggaccaggtctagagcagtgcaaggca
cgaggggaggaggggaaagagggggaaggcgaggcaagcatggaggagtccagctctaaa
gaccctctcatcatccgcaaagtttctgcagtgtctttgggccaagccatctctgtggtg
ggagcatataagagtcaacctgctgaggagacacctcaggccaagaagcttccagaacct
attctgccttcaacacagtccaaagcaccgggcagcagtggacggaaaaaagtcttccga
ctggctgatgtagtccagcccttgtctgattctcagcttgaaaagttaaccaatatggct
gtcaaacgcatcctgcaagcagagaaggccattgcacgtagtggcatgtcacatgtgcgc
gtgaagctgttggcaaggttaatgacacagtttgaggggacgatgaaggatgacatgctg
cgtttcatcttggaggatatgcgaaccaggagtgacctggctttctcactgctgtaccag
gaatacaaccagtacctgagccagctgccatcgggttcgctggacagctatgagcactgc
ctattttccctactctccggcctgcaggagcgacctgaacagagagacgggctgttcacc
aagctggtgttggaggctcctctgattacagagtctgcactggaggtgatccgacgctac
tgcgaggacgagtctcgcgtttatctgggaatgaccacactgaaggagcttatactcaaa
cgcccttccagacagttccagtaccttcatgttctactggacctcagctctcatgacaaa
gagaaggtgcgctctaccgccctcaccttcatcaagcgaatgtatgagaaagaccacctg
agggaatacatagagaaatttgctctaaattacatgcaactgctggtccatccaaaccct
ccttcattgctgtttggagttggagaggacacagaggtggcctctccttggacagaggag
acagtgaggcagtgcctgtatctctacctctcccttctccctctcaaccatcgtctggtc
catgagctagctgctgtctatactgaggccattgctgatatcaaacgcagcgttctccgt
gtcatagagcagcccatcaggggaatgggtatgaactctcctgacctgctgctgcttgtg
gagaactgtcccaaaggagcagagactctggttacacgctgtctgcacatactgactgac
aaagtgccaccatctccagacttggtagagcgagtgagggatctttatcacaaacgagtg
ccagatgttcgtttccttatcccagtcatcaatggcctggagaagaaagaggtgatccag
gcactgcccaaactcatcaagctcaatcccatagtggttaaggaagtcttcaatcgtctc
ctgggcacacaacacagtgagggtagtccctcaatgtctcctctaactcctggtgagctc
ttgatcgctcttcacaacattgactccaccaagtgtgacatgaagtcaattatcaaagct
accaacctgtgctttggtgagaagaatgtgtatacgtctgaggtgctggctgtggtgatg
cagcagctgatggagcagaatcctctccccatgctgctgatgcgcactgtcatccagtca
ctcaccatgtatccccgcctgggcggcttcgtcatgaacatcctctcccgcctcattctc
aaacaggtgtggaagtaccccaaagtgtgggaaggctttgtaaagtgctgccagcgcacc
aagcctcagtcctacagcgtgctgttgcagctgccgcctgcacaactgatcagcgtgttt
gagcgctgcccggaaatgagggagcctcttctgcagcatgtccgctccttcaccccacac
cagcaagcccacattccatcctccatcatggctatactggaggctagcagcagaatgcag
gagccggagccacagcgtgaacctgaacacatggaggcaatggaggagagagagatgcat
ccccagcaagtcatgatgcctgtagcacaagcagaagctccagccccatctgtgacagct
gtccatgaaacagttcctcctcagtcaggatcgatcaaaagggaagaagaggagcctatg
gaggaaggagaggcagatcttgaacgtctacaggttgtcagtgaagccacaacacaacag
attgaagcactcaaatctgaaccagggacagccagtgttcctcaagaaaaagcagaagaa
ccaatggagacgtttactaaatctgctgatgcagctgaccagccccaagaggaggtggac
agtgtagcagaaccagagacgccagcaggagaggctgaacgaagccgagaggaagaggac
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (47)   

Download RDF
DBGET integrated database retrieval system