KEGG   Astyanax mexicanus (Mexican tetra): 103046080
Entry
103046080         CDS       T05042                                 
Name
(RefSeq) collagen alpha-1(XII) chain-like isoform X1
  KO
K08132  collagen type XII alpha
Organism
amex  Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:amex00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:amex00535]
    103046080
Proteoglycans [BR:amex00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   103046080
SSDB
Motif
Pfam: fn3 VWA VWA_2 Pur_ac_phosph_N Collagen DUF4998 Laminin_G_2
Other DBs
NCBI-GeneID: 103046080
NCBI-ProteinID: XP_007253880
Ensembl: ENSAMXG00000008403
Position
9:complement(21787175..21866144)
AA seq 3202 aa
MKIRLSVAAAAFLTLLLNTAQAQVEPPSDLKFNILSENTVQMSWKRPSSLIQGFRIQVVS
DTDDTKDLTLPASATSTEITKLTPDVDYSVSINSFYGSDESIPIFGQITIQSSNASGTAR
QPQVTDAVKCSVGAIADLVFLVDGSWSVGRENFKFIRSFIGAMAGAFDIGEDKTRVAVVQ
YSTDTRTEFNLNQHFRRADLLRAIKNLPYKGGNTMTGEAMEYLVKNTFTEAAGARKSFPK
VAMIITDGKSQDPVDEYARRLRNIGAEIFVLGIKGADEEELREIASTPHNKHIYSVSDFD
LIKEVQQRLIREVCSGVEDQLSSLASGEEVVEPASNLQVTEISSKSMRVTWDASPGDITG
YKLQLIPMLAGSKRQELYTGPSHTSVNVRDLSPETEYEISLFALKGLVPSEPVLAMEKTQ
PVKVSTECSLGVDVQADVVLLVDGSYSIGLANFAKVRSFLEVLVNSFDIAPNKVQLSLVQ
YSRDPHTEFALNKHHDIAAVVKAIRTFPYRGGSTNTGKAMTYVREKIFINSRGARDNVPR
VMVLITDGKSSDSFKDPAANLRNSDVEIFAVGVKDAVRSELEAIANPPADNHVFEVEDFD
AFARISKELTQSICLRIEQELLNIKKRSLLPPKSLSFSEITSRSFRATWVSDSQDVLSFL
VRFRPAADVTGDYVSMAVPADTTTAILPHLTPLTTYEVNVFAQYDKGDSFPLTGEETTLE
ETGGVRNLRVTEETTDSFRVSWQAAPGSVLRYRLFYEPVSGGDKLEAETEGSQTTIVLQE
LFPITTYRVTVIAEYASGMGPPMNTLGTTKEAKGSPRDLRVFEETETTMKLSWQAAPGNV
LQYRIAYKPEDGERKEIAVKGDNTATMLKNLSPGTEYELFVSARYSSGLGDPVLGKGTTL
EVLGSPKDLVTKDVTETSFVASWTPAPGNVRSYRVAWKSLFTEEAGEKTVPGDVTTTVLD
GLTPETRYKVSVYAAYGRGEGEPLVGEETTDVSAAAKAITVTEETERSMRATWRPAPGNV
VNYRVSYKPHDGALPMVTKTQPGTTTVVLRRLQPITTYDIVVVPVYKHGDGRARQGEGTT
LSLYKAPRNLQTSEPTKTSFRVTWDHAPGDVKGYKVTFHPIDNEVDLGELVVGPFDNTVV
LEELRAGTKYTVSVFGVFDGGESMPLAGEEKTTLSDEPSTPVIEASDVVCKTTAQADIVL
LVDGSWSIGRLNFKTIRAFIARMVGVFDIGPDRVQIGLAQYSGDPKTEWHLNAHRTRDSL
LEAVANLPYKGGNTLTGLALNYILQNNFKANVGMRPNSRKIGVLVTDGKSQDDIIANSQN
LRDQGIELYAIGVKNADENELRSIASDPDEIHMYNVADFSFLLDIVDDLTDNLCKSVKGG
GVASPTDLVTSEVTYFSFRATWTGPEGPVEKYRVEYVPVAGGETQQLFVDGAVTTVVLEG
LDPLTEYSVSVFSVVGEESSEPLLGAETTLPLSSGRSMTIYKQRTTSMRVKWEPSEGATG
YVVLYIAKNATKPTTEQEIRVKAKITDVQLKELIPNTAYTITVYTLRGTATSDPLTDQGV
TLPLPPAGELRIRDVTHSSMMLHWDAAPGLVRKYTITYKPEGGELKELEVDGDLTTTKLE
NLRSQTEYDVAVTPVYDSGLGSPMLNQAVTDVVPAPKNLRFSEVTQTSFRAHWEHGAPDV
ALYRIGWTKSGENNWIYDILSNEDTTYLLENLDPDTLYDVSVTAIYPDESESEDLLGSQR
TLSKVVITPPPNGPPQNLQVYNATTTSLTVKWDHAPGKVQNYRITYVPVAGGRTQTTMIG
GKKNTINLQKLTPDTPYSITVAAIYANGDAKDISGEGKTLPLGGVRNLRVTDPTISTLNV
QWEPAEGNVRQYRILYQAATGGPEDMEQVSGRTFSTVLKELQSDTVYAVTVVPIYAAGEG
NRITENGKTLPLGGVRNLRVTDPTPSTLNVQWEAAPGNVRQYKILYRLALGGPEEMVQVS
GQTFNTVLKNLQSDSVYAVTVVPVYATGDGKALTENGKTLVRSPPRNIQVFNPTTNTLNV
RWEHASGPVQQYRVEYSPLTGTRPTQSVLVPGNTNTALLEQLLSNTDYNVGVVAIYSDGE
GAAVKDNGKTLPRSGPRNMRVYDPTTNTLTVSWEHAAGPVQQYRISYAPTTGDPIEEFTS
VPGNRNNVILQNLQPETPYLINVVAMYPDGAGGELSGDGHTLGLLGPRNLRVSDEWYTRF
RVSWDAAPARVNGYKLAYAVEGTDQFNEVFVGDVTTHMLHMLQPGTTYDLKVFAQYDAGP
SGPLVGQGTTLYLNVTDLVTYNVGYDSFCIKWTPHRAATSYRLKVNPFIPSNSGAQEVTI
TAAESQYCFDGLTPDALYNATVYTQTPNQEGPGVSVKERTLVKPTVAPTLPPTPPPPPTI
PGALEVCKGAKADLVFLIDGSWSIGDESFSKVLQFVFSMIGAFDVVSHEGMQVSFVQYSD
DAKTEFKLNTYHDKGMALSAVRMINYRGGNTKTGAALKHVGEKVFTSDSGMRRNVPKVLV
VVTDGRAQDDVKKSASKLQHSGYSVFVVGVADVDLVELRNIGSKPSERHVFIVDDYDAFA
KIQDNLITFICETATSTCPLIYLDGFTSPGFRMLEAFNITDRTFAGMNGVSMESGSFNSF
ITYRLHKDSFISQPTKEIHPDGLPPSYTLILLFRLLPDTTKDAFDLWQISDKNDNPEVGL
TLNPSSRTITFYNKDTRGEIQKVTFDNNHVKKIFHGSFHKLHISISPKNVKLNIDCQEVA
EKPIKEANNITTDGYEVLGKMAKSGGGKKQSATFQLQMFDIVCSLGWTSRDKCCDLPATR
DEAKCPALPHSCTCAQDSVGPPGPAGPQGNPGTKGPRGDRGDSGPTGSMGPRGEQGLPGP
MGPPGPQGPNGLSLPGEPGRPGPKGDPGDSGIPGQRGPVGASGPLGPVGPAGPRGPPGPE
GPSGPRGPTGQMGSPGAPGMPGNSGKPGKAGEPGLPGNAGIKGEKGERGDSSSQNMMRSI
ARQVCEQIVNRQMSRIDMMLNQIPTGYRNNNPGPAGPPGPPGNQGPRGEPGQTGRNGFPG
NPGLPGPQGERGLTGEKGERGSPGIGDRGQRGLPGPPGPPGLSQTGPPGPTGSAGPRGPP
GRQGGAGVRGPPGPPGYCDSSQCVGIPYNGQGYPGRYPSEPETYVVPIPAEPSEDTVTEI
QSPGLRNQRGKRSLSTRQAKRL
NT seq 9609 nt   +upstreamnt  +downstreamnt
atgaagatcaggctgtcagtggccgctgcggccttcctcactctattactaaatacagca
caggctcaagtggaacctccctcagacttgaaatttaacatcctaagtgaaaacacagtg
caaatgtcatggaagaggccatcatctctgatacaaggcttcagaatacaagttgtttca
gatacagatgatactaaagatctgactctgcctgcctcggccacaagcacagaaattaca
aagctcactccggacgttgattactcagtatcaatcaactccttttatggctcagatgaa
agcatacccatatttggtcaaataacaattcagtccagtaatgcgagtggaacagccaga
caaccgcaggttacagatgctgtcaagtgctcagtgggcgctatagcagatctggttttc
ctggtggatggttcctggagtgtgggaagggaaaatttcaaattcatccggagttttatt
ggggccatggcgggagcttttgacattggagaggataagaccagagtggctgtggtgcag
tacagcacagacaccaggacagagttcaaccttaaccagcatttcagacgagcagatctc
ctccgggccatcaagaacctgccttacaaagggggcaacaccatgacaggtgaagccatg
gagtatctggtgaaaaacactttcactgaagctgctggagccaggaaaagtttccccaaa
gtggccatgatcatcacagatggaaaatctcaagatcctgtggatgagtatgccagaaga
ctgaggaacataggagctgaaatatttgtcttgggcatcaaaggtgctgatgaggaggaa
ctaagggaaatagcctctacacctcacaacaagcatatatacagtgtgtctgactttgat
ttaattaaggaagtacagcagaggctcatcagagaggtgtgttctggtgtggaggaccag
ctcagctcccttgcgagtggagaagaagttgttgaaccagcttcaaacctccaagtgaca
gagatctcttccaagtccatgagagttacgtgggacgcatccccaggtgatattaccggc
tacaagctgcagctcatacccatgcttgctggcagcaagagacaggagctgtatactgga
cccagccacacatctgtgaatgtcagggacctgtccccggagacggagtacgagatcagt
ttgtttgcacttaagggtcttgtccccagtgagccagtactggccatggagaagactcag
cccgtcaaagtgtcaacagagtgctctctgggagtggacgttcaggccgatgtcgttctg
ctggttgacggttcatacagcataggactggcaaattttgccaaagtgaggtctttcctg
gaagtgctggtcaattcctttgacattgcacccaataaagttcagctcagcttggtgcag
tacagtagggaccctcacactgagtttgccctcaacaagcaccacgacattgctgcagtg
gtgaaggccattcgcaccttcccctaccgaggaggctccaccaacactggcaaggccatg
acctacgtgagggagaaaatctttataaacagccgaggcgcccgtgacaacgtaccgcga
gtcatggtactcatcactgacggcaagtcctctgactctttcaaagaccctgcagctaac
ttgaggaactcagacgtggagatcttcgctgtgggggttaaggatgctgtgcgctctgag
ctggaggccatcgccaacccccctgctgacaaccatgtgtttgaggtggaagactttgat
gccttcgcaaggatttccaaggagctgactcagtccatctgcctcaggatagaacaggag
ctcctcaacatcaaaaagagaagtttgcttccaccaaagtccttatcattctcagagata
acatcccggagctttagggccacttgggtctctgattcccaagatgttctgtcattcctg
gtgcgtttccgcccagctgctgatgtcaccggagactacgtctctatggctgtgcccgct
gacaccacgactgccatcttgccgcacctcaccccacttaccacctatgaggttaacgtc
tttgctcagtacgacaagggagacagctttccattaacgggagaggagaccactttagaa
gagacaggaggtgttcgaaacctcagagtaacagaggagaccactgacagcttccgagtg
tcgtggcaagcagctcccggctctgttctgcgctataggctgttctacgagcctgtgagt
ggtggagacaagctagaggcagagactgaaggcagccagaccaccatcgtgctgcaggag
ctgtttcccatcaccacctaccgtgtgactgttattgctgagtatgcatctggaatgggc
cccccaatgaacactcttggcaccaccaaagaagctaagggctctccacgcgatctgagg
gtgtttgaggagaccgagaccaccatgaagctctcatggcaagctgctcctggaaatgtg
cttcagtatcgcatagcctacaaacctgaggacggggagaggaaagagattgctgttaag
ggagacaacacggcgaccatgctcaaaaatctgtcaccaggcacggaatacgagctcttc
gttagtgcccgctactcctctggcctcggagaccctgtcttgggaaaaggcaccacatta
gaagtccttggctctcctaaagacttggtcactaaggatgtcactgaaaccagctttgtt
gcctcctggaccccggcgcctggcaatgtccgttcttaccgggtcgcctggaaatcccta
ttcactgaggaggctggggagaagacggtcccgggtgatgtcaccaccacagtgttggat
gggctgactccggagacacgctacaaggtctctgtgtatgcagcctatggccgtggagaa
ggagagccgctggtgggagaggaaaccacagatgtctcagctgcagccaaagccattact
gtaactgaagagacggagaggagcatgcgcgccacatggcgaccggcacccggcaacgtg
gttaattaccgagtgtcatacaagcctcatgatggcgcactcccaatggtcaccaaaaca
cagcccggcaccaccactgttgtcttgcggcgacttcagcccattaccacctacgatatt
gtagtggttcctgtctacaagcatggagatggacgagcaagacaaggagagggaaccaca
ttatcattgtacaaagctccaagaaaccttcaaacatctgaacccactaagaccagtttc
agggtcacatgggaccatgcgcctggagatgtgaagggctataaagtgactttccatcct
atcgataacgaggtggatttgggagagctggtcgtcggtccatttgacaacactgtggtt
ttagaggagctcagagctggaactaagtacacggtcagtgtgtttggagtgtttgatggt
ggagagagcatgcccttggctggagaggaaaagaccactctctctgatgagccttctact
ccagtaattgaggcttcagatgtggtgtgcaaaaccactgcccaggctgatatagttctg
ctcgtggatggctcttggagtatcggacgtctgaacttcaagaccatcagggccttcatt
gctcgcatggtgggcgtttttgacattggcccagatcgtgttcagattggtttggctcag
tatagtggagatccaaagactgaatggcatctaaatgcacacagaacaagggactcgctg
ctggaggctgtggccaacctgccgtacaaaggaggaaacacactgacaggccttgccttg
aattatatcctgcagaacaattttaaagctaacgtgggcatgcgtccaaactcccgtaaa
attggtgttcttgtcactgacggcaaatctcaggatgacattatcgcaaactctcagaat
ctgcgtgaccagggcattgagctctatgcgatcggtgtgaagaatgctgatgaaaacgag
ctgcgctccattgcctctgatcctgatgaaattcacatgtataacgtggcggacttctcc
ttcctgctggacattgttgacgacctgacagacaatctctgcaaaagtgtcaaaggagga
ggagtggcatcacctactgacctggtgacctctgaggtgacctacttctcattccgcgcc
acctggaccggacctgagggccctgttgaaaagtaccgtgtggagtatgtgccggtagct
ggaggcgaaactcagcagctatttgtggatggggcagtgaccaccgtggtgctagaggga
ctggatccattgacagagtactcagtgagcgttttctctgtggttggagaggagagcagt
gagccactcttgggcgcagaaaccacactgcctttaagttcggggaggagtatgaccatc
tacaaacagcgtaccaccagcatgagggtgaaatgggagccctctgaaggagcaacgggc
tatgtggtgctttacatcgcaaaaaatgccactaagcctaccaccgaacaagagattcgt
gtgaaagccaagatcacagatgtccagctgaaggagctcatccccaacacagcctacacc
atcactgtctacaccttacgtggcacagcgaccagcgaccctcttacagatcagggggtg
accctgcccttgcctcccgctggtgagctgaggataagagatgtcacccacagctccatg
atgctacactgggatgctgcgcctggccttgtgcgcaagtataccattacttacaaaccg
gagggaggagagctaaaagagcttgaagtagatggagatctgacgacgacaaaactggaa
aacctcaggtctcagactgaatatgacgtggctgtaactccagtgtatgactctggactc
ggaagtccaatgctcaaccaagctgtcacagatgtcgtcccagcgccaaagaacctgagg
ttctctgaggtaacacagacaagcttcagggcacattgggagcacggtgccccagatgta
gctctctaccgaatcggctggacaaagtcaggagaaaacaactggatatatgatatccta
agcaatgaagataccacttacctcttggagaacctagacccagataccctgtatgatgtc
tctgtcactgctatttatccagatgagtcagagagcgaggaccttcttggaagccagcgg
acattatccaaggtagtaattacacctcctcccaacggcccccctcagaacctgcaggtg
tacaacgccaccaccacctcactcacagtaaaatgggaccatgctccaggcaaagtgcag
aactacaggatcacatacgtgcccgtagcaggaggcaggacccagacgacgatgatcggt
gggaagaagaacacaatcaatctgcagaagctgacccctgacaccccctactccatcact
gtggcagccatatatgcaaacggagatgccaaggacatatctggggaaggaaaaacgttg
cctcttggaggagtgaggaacctgcgagtgactgatcccaccatcagcactctgaacgta
cagtgggagccagctgaaggcaatgtgcgccagtacaggatcctatatcaggcagctacc
ggaggcccggaggacatggagcaagtctctgggaggactttcagtactgtgttgaaggag
cttcagtctgacaccgtctatgctgtcactgtagtgccaatatatgctgcaggagagggg
aatcgcatcactgagaatggaaagacattgcctcttggaggagtgaggaatcttcgagtc
actgaccccacacccagcactctgaatgtgcagtgggaggcggctccaggcaacgtgcgc
caatacaagatcctatatcgcctggctctgggaggccccgaagaaatggttcaagtatct
ggacagacttttaacactgtactgaagaatcttcagtctgactctgtgtatgctgtcact
gtagtgccggtatacgccacaggagacggcaaagccctgactgagaacggaaagactttg
gtgcgcagccctcccaggaacatccaggttttcaaccccacaacaaacaccctgaatgtg
cgctgggagcacgcttcaggtcctgtgcagcagtacagagtcgagtattccccacttacc
ggaactcgcccaacccaatcagtccttgtaccagggaatactaatactgccctgttggag
cagttattgtcgaacacggattataatgttggagtagtggctatctattctgatggagag
ggtgcagcagtgaaggataatggcaaaacactgccccgcagtggcccgagaaacatgcgc
gtctatgaccccactaccaacactctgactgttagctgggagcatgcagctgggcctgtg
cagcagtaccgaatcagctatgcaccaaccactggggatcccatcgaggagtttacaagt
gttcctggcaacagaaacaacgtcatcttgcagaatctgcagccagagacaccttaccta
atcaatgtggtggctatgtaccctgatggagctggaggagagctttctggggatggacac
acattggggcttttggggccacgaaacctgcgcgtgtccgatgaatggtacactcgcttc
cgtgtttcctgggatgctgcacctgccagggtcaatggctacaagctggcctatgccgtg
gagggtactgaccagttcaatgaggtatttgttggagatgtgaccacccatatgctgcat
atgctccagcctggcaccacatacgatctgaaggtcttcgctcagtatgatgccggcccc
agtggtcctcttgttggccaaggaactaccttgtacctgaatgttactgacctcgtaaca
tacaacgttggctatgactcattctgcattaagtggactccacatcgagctgctacctcc
tacagactcaaagtcaacccttttatcccctctaacagtggagcccaggaggtcaccatc
acagctgcagaaagccaatactgctttgatggcctgacccctgatgcgctctacaatgcc
actgtgtacacgcagactccgaaccaggaagggcccggagtcagtgtaaaagagcgcact
ttggtgaagcccactgtagcccctacgctgcctcctacgcctcctcctcctcctaccatc
cccggtgcccttgaggtgtgcaaaggtgctaaggctgacctggtgttcctcattgatggc
tcttggagtattggggatgagagcttcagtaaggtgcttcagtttgtgttcagcatgatt
ggagcttttgatgttgtcagccatgagggcatgcaggtgtcctttgtgcagtatagtgat
gatgccaagaccgagttcaaattgaacacataccacgacaaaggaatggctctgtctgct
gtgcggatgatcaactacagaggaggaaacaccaaaacaggtgctgctctgaagcacgtt
ggagaaaaggtcttcacctcagacagtggtatgaggaggaatgttccaaaggttctggtt
gttgtcactgatggacgtgctcaggatgatgttaagaagagtgcctccaaactgcagcat
tcaggttacagtgtgttcgttgtgggtgttgccgatgtggacctggtggagttgaggaac
attggcagcaagcccagcgagagacatgtcttcattgttgacgactatgatgcgtttgca
aagatacaagacaacctcattacgtttatctgtgaaacagcaacatcgacatgtcctctg
atctacctggatggatttacctcaccaggctttaggatgcttgaagcctttaacatcact
gaccggaccttcgctggtatgaatggagtgtctatggaatctggctccttcaacagtttc
atcacctatcgacttcataaggattcattcatctcacagcccacaaaggaaatacatcca
gatggtctacctccgtcctacacccttatacttctcttccgcctccttcctgacaccacc
aaagatgcatttgatctgtggcagatttccgataagaatgacaaccctgaagttgggctt
actcttaacccttccagcaggaccattacattttacaacaaggacactagaggcgaaatc
cagaaagtaacctttgacaacaatcatgtcaagaagatattccacggaagcttccacaag
cttcacatctccatctcaccgaaaaacgtcaagctgaacatcgactgccaagaggttgca
gagaagccgattaaagaggctaacaacatcaccacggatggctatgaagtccttggtaaa
atggcaaagtctggtggtggaaagaaacagtcagccacattccagctccagatgtttgat
attgtctgcagcttgggctggacaagtcgagacaaatgctgtgacctgccagcaacgaga
gatgaagctaaatgtccagccctccctcactcctgcacatgtgctcaggatagcgtaggc
cctccagggcctgctggtcctcagggtaaccctggtacgaaaggcccacgtggtgataga
ggagattcaggccctacgggttcaatgggcccacgtggagagcaaggtcttccaggccca
atgggaccaccaggtccgcagggtcccaacggactctctcttcccggagaacctggacgg
cctggacctaaaggagaccctggtgactcaggaatacctggacagagaggccctgttggc
gcttctggcccacttggtcctgttgggccagctggaccaaggggaccaccaggaccagaa
ggcccgtctggacctagaggcccaactggacaaatgggaagcccaggagctcctggaatg
ccaggaaatagtggaaaacctggtaaagctggagaaccaggactcccaggaaatgctgga
ataaaaggagaaaagggtgaaagaggagattcatcctctcaaaacatgatgagatccatt
gcgagacaagtctgtgaacaaatagttaacagacaaatgagcagaatcgacatgatgctg
aaccagatccccactggataccgtaacaacaatcctggtcctgctgggcctccaggacct
cctggaaaccaaggacctcgtggagaaccaggacagactggacgcaatggtttccctgga
aatcctggtttaccaggacctcaaggagaaagagggttgacaggagagaagggtgagaga
ggcagtccaggcattggcgatcgaggacaaagaggattacctggaccacctgggccacca
ggcctgtcccagactggcccccctggtcctacaggctcagctggaccccgtggcccacca
ggacgccagggtggtgcaggagttagagggccacccgggcctcctggttactgtgattcc
tctcagtgcgttggcattccttacaacgggcaaggatacccaggccgctacccatctgag
cctgaaacctacgtagtgccaattccggcggaaccatcagaagatactgtgacagagatt
cagtcccccggtttacgaaaccagcgcggaaagagatcactatcaacacggcaagctaaa
aggttataa

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (70)   
   KEGG ORTHOLOGY (1)   
   RefGene (65)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (7)   
   Pfam (7)   
All databases (92)   

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