KEGG   Anaplasma marginale Florida: AMF_194
Entry
AMF_194           CDS       T00855                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit (rpoB)
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
amf  Anaplasma marginale Florida
Pathway
amf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AMF_194 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amf03021]
    AMF_194 (rpoB)
   03400 DNA repair and recombination proteins [BR:amf03400]
    AMF_194 (rpoB)
Enzymes [BR:amf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AMF_194 (rpoB)
Transcription machinery [BR:amf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AMF_194 (rpoB)
DNA repair and recombination proteins [BR:amf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AMF_194 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 7TMR-HDED Bac_rhamnosid_C
Other DBs
NCBI-ProteinID: ACM49073
UniProt: Q8KWX4
Position
214571..218731
AA seq 1386 aa
MRELMSSAGGSSGPGYVLNDFDAVPRLSYAKSIDIRDSLTDLIRIQRDSYDAFIGIDRDG
SSGIQSIFEAMFPIRDLLGRAVLEFVGYNIGEPQYDEYECIKRGITFSVPIRITLRFVVW
KVQEVSFKEVKYVVDEDTSERSVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHR
SPGVFFDSDKGKTYSSGKLIYSARVIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVSYLLK
ALGMSNNDILDAFYDKVIYTRCDKGWRVPFIVDRFKGVRLSYDLMDVDGSVLVKANTRIT
LRIAKKLYADGLREYMVPFSGITGMFVAADLVDPSSGAVIVSAGETITSEHIVKLELFDI
SEIAFLNIDFLTVGPYVLNTLFLDKNMTQEDALFEIYRVLRSGESPNLDAVKSFFKGLFF
ESERYDLSVVGRIKLNSHLGLDVDENTTVLTKEDIVQVVKKLVLLRDGEGVVDDIDHLGN
RRVRSVGEFIENQFRIGILRLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQ
LSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIG
LISSLAIYAKINKYGFIESPYRKVENRVVTDKVEYLLAMQEGDYYIADAGAAIDENNRFV
DDMLYCRHGGNFVMVKSEDVDYVDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV
PLLKSEAPLVGTGMEFVVAAGSGAVVLAKRDGIVHRVDGSYIVIRAFDANKDECLGVDIY
RLRKFQRSNHNTCINQRPVVKLGDYVKANDVIADGSAIDRGELALGKNVLVAFMSWQGYN
FEDSIVISSDVVKRDVFTSIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIV
NIGAEVSASSILVGKVTPRPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDV
HVFVRRGVEENDRSLLIKQSEISSFVKERDYEIDVVSEYFHDELRKLLRNAGVKVKGYSD
LDSFFAEASDDTLWSTGLADAKVAAKVKDMRERFDSIVGEAHRKFEQKVDKLNYGYDLPQ
GVLTIVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPAEDMPHLEDGTPVDIILNSLGVP
SRMNIGQILETHLGWAAVNLGKKIGRILDKGGPSMIADLRDFLDKIYDGQKLKSDIASMS
SEALLVFANRLRKGVPMAAPVFEGPKDAQISKLLELAEVDPSGQVYLYDGRLGKKFDRKI
TVGYIYMLKLHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAY
TLQEMLTVKSDDIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLNVVLKQDKEF
TSGEVE
NT seq 4161 nt   +upstreamnt  +downstreamnt
ttgagggaattaatgtcttctgcgggtggttcttctggtcccgggtatgtgctgaatgat
ttcgacgctgttcctaggctctcttacgcgaaatccatagacattcgcgattctttgacg
gatctcataaggatacaaagggattcttatgacgcgtttataggtatagatagggatggg
agcagcggcatacagagcattttcgaggccatgtttcccatacgcgatcttctgggtaga
gcagtgctcgagtttgtgggctacaacataggcgagccgcagtatgatgaatacgagtgc
attaagcgcggaattactttttccgttcccatacgaattaccctgcgctttgttgtatgg
aaagtgcaggaggtgtccttcaaggaagtcaagtacgtggttgatgaggatacctcagaa
cgtagcgtgaaatatatgaaagagcaggaagtttccattggtgatttgccgatgatgact
tcatatggaactttcataatcaacggaatagagcgggtaatagtttcccagatgcaccgt
tctcccggggtctttttcgacagcgataagggtaagacttatagctcgggtaagctcatt
tactccgcgcgcgttataccatacaggggctcctggctcgattttgaatttgacatcaaa
gacataatttatttccgcatagacaagaagagaaagctccccgtatcttacttgctaaaa
gccttggggatgtcaaataacgacatccttgacgcgttttacgacaaggtgatttacacg
aggtgcgacaaggggtggagggtgcccttcattgttgaccgattcaaaggtgtgcgcctt
tcctatgatctcatggatgtcgacggcagcgtgcttgtgaaggccaataccagaattacc
ttgagaattgcaaaaaagctgtacgctgatgggcttagggaatacatggtgccgttctct
ggcattaccgggatgttcgttgcagccgatcttgtagatccgagtagtggtgcggtcatc
gtgtctgcgggtgagaccataacgtctgagcatatagtgaagctagagctgtttgatatc
agcgagattgcgtttttgaatatcgacttcctcacagttggtccgtacgtgttgaacaca
ctgttcctggacaagaatatgacgcaggaagatgcgctgttcgagatttacagagtgctt
cgttctggtgagtcccctaaccttgatgcagtgaagtcctttttcaaggggctgttcttc
gagtcagaaaggtacgatctgtcagttgttggtagaataaagctgaacagccatctaggc
ctggatgttgacgagaacacgactgtgctcaccaaagaggacatagtgcaagtagtgaaa
aagctggtcttgctgcgtgacggcgagggtgttgttgatgacatagaccaccttggaaac
agaagggtcaggtctgttggggaattcattgagaatcaattcaggatagggattttgcgg
ttggagcgcatgattatggactatatgtcctcggtgaactttgacaatgcgatgccctgt
gatttcgtcaatcctaaggtgctggctacagtacttaaggactttttcagctcatcgcag
ctgtctcaatttatggatcagacgaatcccctgtccgaagttacgcataaacgcaggctg
tctgctctagggccgggtggcttaaccagagaaagggcgggatttgaggttcgtgacgtg
catcccacgcactacgggaggatatgtccgatagaaactcctgaaggtcagaatattggc
cttataagcagccttgccatatatgccaagattaacaagtacgggtttatcgagagcccg
taccgcaaggttgaaaatagggtggtgacggataaagtagagtacctgttggcgatgcag
gagggcgactattacatcgctgatgccggggcagccatagatgagaacaatcgttttgtg
gatgatatgctctactgtaggcacggtggcaactttgtgatggtgaaaagcgaagatgtt
gactacgtcgacgtttccccaaagcagatagtgtctgtagcggcctctctcataccgttt
ttggagaacaatgacgcaaaccgtgccctgatgggctccaacatgcagcgccaggccgta
cccttattgaagtcagaggccccactggttggaaccgggatggaatttgtagtcgctgcc
gggtccggtgcggtggtgttggcgaagcgtgacggcatcgttcaccgcgttgatgggtcc
tacatagtaatccgcgcttttgatgccaacaaggatgagtgtttgggtgttgatatttat
agactcaggaagtttcagcgctctaatcacaatacatgcattaaccaacgacccgtggtt
aaacttggagattatgtgaaggccaatgacgtgatcgcggatggttcggcgattgacagg
ggagagttggcgcttgggaagaatgtacttgtggcctttatgtcttggcaaggttacaac
tttgaagattccatagtaatttcgagcgacgtagttaaacgggatgtgtttacctccata
cacatagaggagttcgagtgcgttgtaagggatacccccttaggtcccgagaagataatg
cggtctgtgcctgatgtaaatgaggaaagtctgagtcacttagacgatgttggaatcgtg
aacataggtgccgaggtatctgcaagtagtatcctggtgggcaaggttacgcctaggccc
ccggtgtctcttcctcctgagactaagctgcttgtcaccatatttggtgaaaaggtcttc
gactgtgttgactcttcgctctatctgccgccggacgttgagggaactgtcatagacgtt
catgtgtttgtaaggcggggggtagaggagaacgataggtcgctgctaatcaagcagagc
gaaataagtagctttgtgaaggagcgggactatgagatcgacgtcgtgagcgaatacttc
catgacgaactcaggaaactgctccgcaatgcgggggtgaaagtcaaggggtacagcgac
ctcgatagtttttttgctgaggcgtctgacgatacactctggagtactgggcttgctgat
gcaaaagtggctgctaaagtcaaagatatgagggagaggtttgactccatcgttggcgag
gcacatcgcaaatttgagcagaaagtagataagctgaactacggctacgatctgcctcag
ggcgtgttgacaatagtcaaggtttttgtggcggttaagcacaatttacagcctggggat
aagatggccggtaggcacgggaataagggggtgatatcaagaatcgttcccgcggaagat
atgcctcacttggaagacggaaccccagtggatatcatactcaactctctaggtgtgccc
tcccgtatgaatatcggacaaattctggaaacccatctgggttgggccgctgtgaatctg
ggcaagaagataggcaggatactcgataagggcgggccgtctatgatcgctgaccttaga
gattttctagataagatctacgatgggcagaagctcaagagcgacatagcgtctatgtca
tctgaggcgttgctagtgtttgccaataggctgcggaagggtgtgcctatggctgcccca
gtgttcgagggcccgaaggacgcgcaaatttccaagttgttggaactagctgaggttgat
ccgtctgggcaggtatatctttacgacgggcgcttgggtaagaaatttgatcggaaaata
accgtggggtacatatatatgttgaagttgcaccacctggttgatgacaaaatacatgct
agatctgtgggcccatacggtttggtgacccagcaacctctgggtggtaaatcccatttt
ggagggcagaggtttggtgagatggaatgctgggcgctgcaggcttatggtgcagcgtat
accttgcaggagatgcttacggtgaaatccgatgatattgtaggtcgggtcaagatttat
gagtccataataaagggtgatagcaactttgagtgtggtattccggaatcattcaacgtt
atggtcaaggagctgcgctccctgtgtctcaatgttgtactgaagcaggacaaggagttt
actagtggcgaagtggagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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