KEGG   Aminobacter sp. MSH1: CO731_03586
Entry
CO731_03586       CDS       T05420                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
amih  Aminobacter sp. MSH1
Pathway
amih03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amih00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CO731_03586 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amih03021]
    CO731_03586 (rpoB)
   03400 DNA repair and recombination proteins [BR:amih03400]
    CO731_03586 (rpoB)
Enzymes [BR:amih01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CO731_03586 (rpoB)
Transcription machinery [BR:amih03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CO731_03586 (rpoB)
DNA repair and recombination proteins [BR:amih03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CO731_03586 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 DOCK-C2
Other DBs
NCBI-ProteinID: AWC24110
UniProt: A0A2S0XM19
Position
complement(3630200..3634336)
AA seq 1378 aa
MAQTQTFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLQAVFK
SVFPISDFSGASMLEFVKYEFEAPKFDVDECRQRDLTFAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQDVYMGDMPLMTSNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDSKDIVHARIDRRRKIPVSSLLMALGMDGEEILSTFYNKITYKK
SGDHWRIPFSVDRFKGLKAVGDLVDADTGEIVVEGGKKITARQAKQLAEKGLKAIKATED
DLFGSYLAEDIVNYATGEIFLEAGDEIDEKTLKVLLSAGEEEIKILDIDHINVGGYIRNT
LTVDKNESRQDALFDIYRVMRPGEPPTIDTAEAMFNSLFFDSERYDLSAVGRVKMNMRLE
LDAEDTVRVLRKEDILAVVKTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKLTNEVVYLSAMEEAKHFVAQANAELDKNGHFVDEFVICRNAGEVMMAPRENV
DLMDVSPKQMVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVAR
DSGAAIGARRGGIVDQVDATRIVVRATEDLDPGKSGVDIYRLMKFQRSNQNTCINQRPLV
RMGDRVNKGDIIADGPSTELGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYSRLSDMLIGKDAIAGPKGFKKGSTLAKETLDDYPRSQWW
QFAVEDEKMQGELEALRGQYDDSKKQLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KMQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDSTHADIVLNPLGVPSRMNVGQILETHLG
WACAGMGRKIGEMIDAYKAAGDIKPLRDTIESIIPANDRNEPVRNYDDESVVRLGEQMRR
GVSIATPVFDGAHEADINEMLEQAGLHTSGQSQLYDGRTGEPFDRKVTMGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENTKIDETAHRLPDAAE
NT seq 4137 nt   +upstreamnt  +downstreamnt
atggcccagacccagactttcaatggccgcagacgcgtacgcaagttcttcggaaagatc
cctgaagttgcggagatgccgaacctgatcgaggttcagaaggcatcctatgaccagttc
ctgatggtggacgagcccaagggcggtcgtcccgacgaaggactgcaggccgttttcaag
tcggtcttcccgatctcggacttctccggcgcttcgatgctggagttcgtcaagtacgag
ttcgaagcaccgaagttcgacgtcgatgagtgccgtcagcgcgacctgacgtttgccgcg
ccgctcaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggataccggcgcgaag
tcgatcaaggacatcaaggagcaggacgtttacatgggcgacatgccgctcatgacgtcc
aacggcaccttcatcgtcaacggcaccgagcgtgtcatcgtttcgcagatgcaccgttcg
ccgggcgtcttcttcgaccacgacaagggcaagtcgcactcgtcgggcaagctgctgttc
gctgcccgcgtcatcccttatcgcggttcctggctcgacatcgagttcgactccaaggac
atcgtccacgcccgtatcgaccgtcgccgcaagatcccggtgtcgtcgctgctgatggcg
ctcggcatggacggcgaggagatcctgtcgaccttctacaacaagatcacctacaagaag
tcgggcgaccattggcgcatcccgttctcggtcgatcgcttcaagggcttgaaggctgtc
ggcgacctggttgacgccgataccggcgagatcgtcgtcgaaggcggcaagaagatcacc
gcgcgccaggccaagcagcttgccgagaagggcctcaaggccatcaaggcgaccgaagac
gatctcttcggcagctatcttgccgaggatatcgtcaactacgcgactggcgagatcttc
ctcgaagccggcgacgagatcgacgagaagaccctcaaggttctgctttcggccggcgag
gaagagatcaagatcctcgacatcgaccacatcaacgtgggcggatacatccgcaacacg
ctgacggtcgacaagaacgagagccgccaggacgcgctgttcgacatctatcgtgtcatg
cgcccgggcgagccgcccaccatcgacactgccgaagcgatgttcaactcgctgttcttc
gatagcgagcgctacgacctttcggccgtcggccgcgtcaagatgaacatgcgtctcgag
ctcgacgctgaagacaccgtccgtgtcctgcgtaaggaagacatccttgccgtggtcaag
acgcttgtcgaattgcgcgacggcaagggcgagatcgacgacatcgacaacctcggcaac
cgccgcgtccgttcggtcggcgagctgatggagaaccagtaccgtgtcggtctgctgcgc
atggagcgcgcgatcaaggagcgcatgtcgtcgatcgagatcgacaccgtcatgccgcag
gacctgatcaacgccaagccggccgcagctgccgtgcgcgagttcttcggttcctcgcag
ctgtcgcagttcatggaccagaccaacccgctgtcggagatcacccacaagcgtcgtctc
tcggcgcttggacctggcggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtg
catccgacgcactatggccgtatctgcccgattgaaacgccggaaggcccgaacatcggt
ctgatcaactcgctggccacctttgcccgcgtcaacaagtacggcttcatcgagagcccg
taccgcaagatcgtcgatggcaagctgaccaacgaggtcgtctatctctcggctatggaa
gaggccaagcacttcgttgctcaggccaacgccgagctcgacaagaacggccacttcgtc
gacgagttcgtcatttgccgtaacgccggcgaagtgatgatggcgccgcgcgaaaacgtc
gaccttatggacgtttcgccgaagcagatggtttcggtcgcagctgcgctgatcccgttc
ctggaaaacgacgacgccaaccgcgctctgatgggttcgaacatgcagcgtcaggccgtg
ccgctggtgcgcgccgaggctccgttcgtcggcaccggcatggagccgatcgttgcccgt
gactcaggcgccgccatcggcgcccgccgcggcggcatcgtcgaccaggtcgacgcgacc
cgtatcgttgtccgtgcgacggaagatctcgatccgggcaagtccggcgtcgacatctac
cgcctgatgaagttccagcgttcgaaccagaacacctgcatcaaccagcgtccgctggtt
cgcatgggcgaccgggtcaacaagggcgacatcattgccgacggtccgtcgaccgagctc
ggcgatctggcgctcggccgcaacgtgctcgtcgcgttcatgccgtggaatggctacaac
tacgaggactcgatcctgctctccgagcgtatcgtggccgacgacgtcttcacctcgatc
cacatcgaggagttcgaggtcatggcccgtgatacgaagctcgggcctgaggaaatcacc
cgcgacattccgaacgtctcggaagaagcgctgaagaacctcgacgaagccggtatcgtc
tacatcggtgcggaggtgcagccgggcgacatcctggtcggcaagatcacgccgaagggt
gaaagcccgatgacgccggaagagaagcttctgcgtgccatcttcggtgaaaaggcgtcc
gacgtccgtgacacctccatgcgcatgccgcccggaacctacggcaccatcgtcgaagtt
cgcgtcttcaaccgccacggcgtggagaaggacgaacgcgccatggcaatcgagcgcgag
gaaatcgagcgtctcgccaaggaccgtgacgacgagcaggcgattctcgaccgcaacgtc
tacagccgcctgagcgacatgctcatcggtaaggacgcgattgccgggccgaagggcttc
aagaagggctcgacgctcgccaaggagaccctggacgactatccgcgttcgcagtggtgg
cagttcgccgtcgaagacgagaagatgcagggtgagcttgaggctctgcgcggccagtac
gacgactccaagaagcagctcgagcagcgcttcatggacaaggtcgagaaggtgcagcgc
ggcgacgagatgccgcccggcgtcatgaagatggtcaaggtcttcgtcgcggtgaagcgt
aagatgcagcccggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcgc
atcgttccggtcgaggacatgccgttcctcgaagatagtacgcatgccgacatcgtgctg
aacccgctcggcgtgccttcgcgcatgaacgtcggccagatcctcgaaacccatctcggc
tgggcttgcgccggcatgggcaggaagatcggcgagatgatcgatgcgtataaggctgcc
ggcgacatcaagccgctgcgcgacaccatcgagagcatcattccggccaacgaccggaac
gagccggttcgcaattacgacgacgagagtgtcgttcgcctcggcgagcagatgcgtcgc
ggcgtctcgatcgcgaccccggtgttcgacggtgcgcacgaggctgacatcaacgagatg
ctggagcaggcgggcctgcacacatcgggtcagtcgcagctctatgacggacgtaccggc
gagccgttcgaccgcaaggtgacgatgggctacatctacatgctcaagcttcaccacctg
gtcgacgacaagatccacgctcgttcgatcggaccttactcgctcgttacccagcagccg
ctgggcggcaaggcgcagttcggcggtcagcgcttcggcgaaatggaggtctgggcactc
gaagcctatggtgccgcctatacgctgcaggaaatgctgacggtgaagtcggacgacgtg
gccggccgtaccaaggtctacgaggcgatcgtgcgcggcgacgacacgttcgaagcgggc
atccccgagagcttcaacgttctcgtcaaggaaatgcgttcgctgggcctcaatgtcgaa
ttggagaacaccaagatcgacgagaccgctcatcgcctgcccgacgcggcagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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