KEGG   Advenella mimigardefordensis: MIM_c26360
Entry
MIM_c26360        CDS       T03016                                 
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
  KO
K00970  poly(A) polymerase [EC:2.7.7.19]
Organism
amim  Advenella mimigardefordensis
Pathway
amim03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amim00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MIM_c26360 (pcnB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amim03019]
    MIM_c26360 (pcnB)
Enzymes [BR:amim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     MIM_c26360 (pcnB)
Messenger RNA biogenesis [BR:amim03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     MIM_c26360 (pcnB)
SSDB
Motif
Pfam: PolyA_pol PolyA_pol_arg_C PolyA_pol_RNAbd DUF2204
Other DBs
NCBI-ProteinID: AHG64705
UniProt: W0PH23
Position
3010893..3012305
AA seq 470 aa
MIKNTIRTFVSRLFAAPVQKDKRRIYSQEQHKIDRRLVSRNAIKVCEVLQQKGYDAFIVG
GAVRDLVLGYEPKDFDVATNATPEEIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAP
SQGNQHTDADGRILNDNVFGTQQEDAARRDFTLNALYYDPVREIVIDYHNGVADLKNHLV
RMIGDPETRFREDPVRMLRAVRFASKLNGTIEPATQAPIHQLAGLIKNVPDSRLFDETLK
LLTCGNAIVALEQLRKEGLHENVLPLIDQVLRQPGGEQFVQLTLERTDHRVRSGKSVSPS
FLFAALLWRLVDVNWKKNLARKEHTVPALSQAADLVIDTHISKMAIQRRHTADMREIWFM
QPRFERRIPKQIWRMTEQPRFRAACDFLQLRAACNEFDSVLAQWWMDLADATPGERTEMI
DGLTAEQQAAGPASPPRKRRKRRSNASSKSRTTGGGNTTGNASSGSPAAS
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgataaaaaatactatacgcacattcgtcagccggcttttcgctgctcctgtccagaaa
gataagcgacggatctacagccaggagcagcacaaaattgaccgacgcctggtttcgcgc
aacgctatcaaagtgtgtgaagtactgcagcaaaagggctacgatgcctttatcgtgggt
ggtgccgtgcgcgatctggtcctgggctatgaacccaaggattttgatgtggccaccaat
gccacccccgaggaaattcgcccgctgttccggcgtgcccgtattattggccggcgtttc
cagctggtacacgttgtcttcggccaggaaatcatcgaaacatccacgttccgcgccccg
tcgcagggaaaccagcataccgatgcggatggtcgcattctgaacgacaatgtgttcggc
acgcagcaggaagatgctgcgcgtcgcgacttcaccctgaacgccctgtactacgatccg
gtcagggaaatcgtgattgattatcataacggcgtagccgatctgaaaaaccatctggtg
cgcatgatcggcgacccggaaacgcgcttccgcgaagatccggtacggatgttgcgcgcc
gtccgctttgcctccaaactgaacggcacgatcgaaccggcaacgcaggcacccattcac
caactggcgggtctgatcaaaaacgtaccggactcgcgcctgtttgatgagacactcaag
ctgctgacctgtggcaatgccatcgtcgcgctggagcagctgcgcaaggaaggattgcat
gaaaatgttctgccattgatcgatcaggtactccggcaaccgggcggcgaacaattcgtg
caactcacacttgagcgtaccgaccatcgcgtccgctcaggcaaatcggtcagcccgagc
tttctgtttgccgcgttgctgtggcgcctggttgacgtcaactggaagaaaaacctggcg
cgcaaggaacacacggtacccgctctgagtcaggcggccgatctggtcatcgacacccac
atcagcaaaatggccattcagcgtcggcatactgcagatatgcgtgaaatctggtttatg
cagccccgctttgaacgccgcatccccaaacagatctggcgcatgacagaacagcctcgt
tttcgtgctgcctgcgacttcctgcaattgcgtgccgcctgcaacgagtttgatagtgtg
ctggcgcaatggtggatggatctggccgacgccactcccggcgagcgtactgaaatgatt
gacgggcttacggcagaacagcaagcagcaggacctgcgagcccgccacgcaagcgacgc
aaacggcgcagcaatgcgagcagcaaaagcagaacgaccggcggcggcaacacaaccggc
aatgcatcttccggcagtcccgctgcttcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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