KEGG   Aurantimicrobium minutum: AUMI_112260
Entry
AUMI_112260       CDS       T05175                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
amin  Aurantimicrobium minutum
Pathway
amin03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AUMI_112260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amin03021]
    AUMI_112260
   03400 DNA repair and recombination proteins [BR:amin03400]
    AUMI_112260
Enzymes [BR:amin01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AUMI_112260
Transcription machinery [BR:amin03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AUMI_112260
DNA repair and recombination proteins [BR:amin03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AUMI_112260
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Birna_VP3
Other DBs
NCBI-ProteinID: BAU99768
UniProt: A0A173LY47
Position
sequence1:complement(1269715..1273590)
AA seq 1291 aa
MLDATAFDKLRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDIDEEGRHADMPGLENELRLELKTLGDQRDARIADRMQRLEND
LAALEAEGAKSDQKRRAKDVAEKEMSQIRKSIDDEIARLERVWEDFRNLKVGDLKPEDAV
FNELVDRYGLYFDAFMGAEAIKRRLETFDLEAEAEALRLEITEGKGAKKIRAIKRLKVVS
SFINTGTSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTVKEGATGEGR
AFSSIAEAILAHDQHTLDLNAMARIRLNDVVFAEGEAPEGYTGGPVLVNTTLGQALFNEA
LPADYPYVQKVADKGTISAIVNDLAERYPKTVVAATLDNIKDAGFHWATRSGVTVALSDV
LTPPNKREIVAGYEKLAAKVQSEFEKGMITDNERRQELIKIWTDATAEVAEAMQKNFPAN
NTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIINSYREGLSVVEYFIATHGA
RKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTTKGLDLPIAAANAAGELVRDANV
ENSIYARSLAADAVDAQGNVIAKAGDDAGDVLIDTLIAAGINEVKVRSVLTCESATGVCA
ACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGTAGADDITQGLPRVQEL
FEARTPKGASPIAETAGRITIEETDKSRKVILTPDNGDEPVIYPVLKRSTLLVSDGDHVE
LGQQLQVGTVDPKEVLRVQGVRAVQQHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVT
VVEHGDTELLPGELVDRSRYTELNRAALQEGKKTASARQEVLGITKASLATESWLSAASF
QETTRVLTQAAMDGKSDPLVGLKENVIIGKLIPAGTGLAKYRNIAVEATEEAKAERYPNR
IFAAEGDFSDADLSFVDFESFSSDDFSGNYN
NT seq 3876 nt   +upstreamnt  +downstreamnt
ttgctcgacgcaaccgcttttgacaagcttcgtatcggtctggccactgctgacgacatt
cgtcgttggtcgtttggtgaggtcaagaagcccgaaacaatcaactaccgtaccctcaag
cctgagaaggacggcctctttggtgagcagatcttcggaccttctcgcgactgggaatgc
tcctgtggcaagtacaagcgtgtccgcttcaagggcatcgtctgtgagcgctgtggcgta
gaggtcaccaagtcatccgtgcgccgtgagcgcatgggtcacattgagttggccgctccc
gttactcacatctggtacttcaagggtgttcctagccgtctgggttacctcctggacatg
gcaccgaaggaccttgaaaaggtcatctacttcgctgcctacatggttatcgacatcgat
gaagagggccgtcacgctgacatgcctggtctggagaacgagcttcgtctcgagctgaag
accctcggcgaccagcgcgatgctcgcatcgctgaccgcatgcagcgtctggaaaacgac
ctcgcagctctcgaagcagaaggtgcaaagtcagaccagaagcgtcgtgcgaaggacgta
gctgagaaggaaatgtctcagattcgtaagtccatcgacgacgaaatcgctcgcctcgag
cgcgtctgggaagacttccgcaacctcaaggttggcgacctcaagcctgaagacgctgtc
ttcaacgagctggtagaccgttacggcttgtacttcgacgccttcatgggtgctgaagca
atcaagcgccgcctggaaaccttcgacctggaagcagaagcggaagctctgcgtctggaa
atcaccgaaggtaagggtgcaaagaagatccgtgcgatcaagcgcctcaaggttgtttct
tccttcatcaacaccggaaccagccctgcggctatggttctcgatgttgttcccgttatc
ccaccagagcttcgccccatggttcagctcgacggtggacgctttgcgacttctgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctgcgtcgtctgcttgacctg
ggtgctccagagatcatcgtgaacaacgaaaagcgcatgctgcaggaagctgttgacgcg
ctgttcgacaacggtcgtcgtggacgtcccgttaccggaaccggtaaccgtgcgctcaag
tcactctctgacatgctcaagggtaagcagggtcgtttccgtcaaaacctgctcggtaag
cgcgtggactactccggtcgttccgtgattatcgttggtcctcagctcaagctgcaccag
tgtggtctgcctaagcagatggcactcgagctgttcaagccattcgttatcaagcgtctg
attgacctgagccacgctcagaacatcaagagcgccaagcgcatggttgagcgaagccgt
ccccaggtgtgggatgttctcgaagagatcatccgcgagcggccagttctgctgaaccgc
gcaccaaccctgcaccgtctcggtattcaggcattcgaacctcagctcattgaaggtaag
gctattcagcttcaccctctcgtgtgtgctgcgttcaacgctgacttcgacggtgaccag
atggctgttcaccttcctctgtcggttgaggctcaggccgaagctcgcatcttgatgctt
gcttcgaacaacatcctcaagccttcagacggtcgccccgtgaccctgcctactcaggac
atgatcattggtctgcaccacctcaccactgtgaaggaaggtgcaaccggtgaaggtcgc
gcattcagctcgattgctgaggcaatcctcgctcacgaccagcacacgctggacctcaac
gcgatggcacgcattcgtctgaatgatgttgtctttgctgagggtgaagcacctgagggt
tacaccggtggtcccgtattggtcaacaccactttgggtcaggcactgttcaacgaggct
ctgcccgctgactacccctacgtccagaaggttgctgacaagggaaccatctctgcaatc
gtcaacgacctcgctgagcgttaccccaagactgtggttgctgcgacccttgacaacatc
aaggacgctggtttccactgggctactcgctccggtgtgaccgttgcactctccgacgtt
ctgactcctccaaacaagcgcgaaatcgttgctggttacgagaagttggctgcgaaggtt
cagtctgagttcgagaagggcatgatcactgacaacgaacgtcgtcaggaactgatcaag
atctggaccgacgctaccgctgaagttgctgaagctatgcagaagaacttccctgcgaac
aacaccattaaccgcatggtcacctctggtgctcgtggtaactggctgcaggttcgtaac
atcgcgggtatgcgtggtctggtgaacaacccgaagggtgaaattatccctcgtccgatc
atcaactcgtaccgtgaaggtctctccgttgtggagtacttcatcgctacccacggtgct
cgtaagggtctggctgacaccgctctgcgtaccgcagactccggttacctcactcgtcgt
ctcgtcgacgtctcgcaggatgtcatcatccgcgaagaggactgtggcaccactaagggc
ctcgacctgccaatcgctgctgctaacgcagccggtgagctggttcgtgacgccaacgtg
gagaactccatctacgctcgtagcctcgctgcagacgcagtggacgctcagggtaacgtc
atcgccaaggctggcgacgacgcaggtgacgttctgatcgacactctcatcgctgctggc
atcaacgaggtcaaggtccgttcggtcctcacctgtgagtctgcaaccggtgtatgtgct
gcctgctacggccgttcacttgctaccggcaagctggtagacatcggtgaagccgtcggt
attatcgctgctcagtccattggtgaacctggaacccagctcaccatgcgtaccttccac
actggtggtaccgctggtgcagacgacattacccagggtctgcctcgtgttcaggagctc
tttgaagcacgtacccctaagggtgcatcgcctatcgctgagactgctggtcgcatcacc
atcgaagagaccgacaagagccgtaaggtcatcctcacaccagacaacggtgatgagcct
gtgatctaccccgtgctcaagcgttcgactctcctcgtttccgatggagaccacgttgaa
ctcggacagcagctccaggttggaaccgttgaccccaaggaagttctgcgcgtacagggc
gttcgcgccgtacagcagcaccttgttggtggcgtgcagggcgtataccgctcgcagggt
gtacctatccacgacaagcacattgaggtcatcgttcgtcagatgctccgcaaggtaact
gttgttgagcacggtgacaccgaactgctccccggtgagctcgttgaccgctcgcgttac
accgagctcaaccgtgctgcgctgcaggaaggcaagaagactgcttcggctcgtcaggaa
gtcctcggtattaccaaggcctcgctggcaaccgagtcatggctgtcggctgcctccttc
caggagaccacccgtgttctcacccaggctgcgatggacggcaagtccgatcctctcgtc
ggcctcaaggagaacgtcatcatcggtaagctcatccccgccggaaccggtcttgcgaag
taccgcaatatcgccgtcgaggcaaccgaggaagctaaggcagaacgctaccccaaccgc
atcttcgcggctgagggtgacttctctgacgctgacctgagctttgtcgacttcgagtct
ttctcgtcggatgacttctctggtaactacaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system