KEGG   Alligator mississippiensis (American alligator): 102570502
Entry
102570502         CDS       T03087                                 
Symbol
THOC2
Name
(RefSeq) THO complex 2
  KO
K12879  THO complex subunit 2
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03013  Nucleocytoplasmic transport
amj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102570502 (THOC2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102570502 (THOC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    102570502 (THOC2)
   03041 Spliceosome [BR:amj03041]
    102570502 (THOC2)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     102570502 (THOC2)
Spliceosome [BR:amj03041]
 Complex C
  Other components
   EJC/TREX
    102570502 (THOC2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102570502 (THOC2)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 102570502
NCBI-ProteinID: XP_014462671
Position
Un
AA seq 1597 aa
MAAAAAALPADWIKNWEKAGKSEFLQLCRTLSDSKSHDMNFRADIQQALYELAYHVVRGN
LKHDQAANVLSDVIEFREDMPSILADVFCILDIETGCLEEKSKRDHFTQLVLACLYFVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCE
PQTLCHILGFKFKFYQEPNGETPCSLYRVAAVLLQHNLIDLEDLYVHLLPVDNAILEEHK
REIVEAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWQH
AQSIMDQMPPFYATSHKSIAIALCRLVHVTIEPLYRRVGVPKGAKGSPISSLPNKRAPKQ
AESFEDLRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEFQSDGSKQEEKEKMEILF
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVK
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGN
KQQHKVHKYITSCEIVMAPVHDAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPHNSYE
REVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEK
DSWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPYMVPENEFHHKDPPARNAVAAT
VQNGPGGAGLPASLAVNTAKLEESTAEETDKLKEKSQGAMKIISKAVNTTPKVTTSNGNS
ASNSKVIKEKEDKEKGGKEKDKEKKEKTPAATPEAKALGKDGKDKPKEERAIKDDKARET
KEKTPKSDKEKEKIKKEEKTPKDEKSKTVVISIESKSAAEKEREKEPSRERDVAKDMKSK
ENIKGGEKMPVVGSLKSPVPRSETSESEREQKRRKVDTHSSPSHSSTVKDNLSELKDSSA
KHYINHTTPTLSKSKEREVDKKDLDKSRERSREREKKDEKDRKDRKRDHSNSDREVQQDS
TKRRKEENGTTGSSKHSKSESPSDSPRSNEKEKEKNKSKSSGKEKGDSIKAEKMEKSSSG
SKKESRHDKEKTEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq 4794 nt   +upstreamnt  +downstreamnt
atggcggcggcggcggcggcgctccctgccgactggataaagaactgggagaaggcgggc
aagagcgagtttttgcagctatgccgcactctcagtgacagtaaaagccatgatatgaat
ttcagagcagacatccagcaggctctatatgagcttgcatatcatgttgtcaggggaaac
ctaaagcatgaccaagctgctaatgttctcagtgatgtcatagaatttcgggaagatatg
ccctccattcttgctgatgtattctgcatattagatattgaaacaggttgtttagaagaa
aaaagcaagagagatcattttacacaactggtgttagcttgtttgtacttcgtttcagac
actgtcctaaaggagcgactagacccagaaacattggaatctttaggacttatcaagcaa
tctcagcagttcaatcagaaatctgtcaaaatcaagaccaaacttttttataagcagcag
aaatttaatctcttaagagaagagaatgaaggctatgcaaaactgattgctgaactggga
caagatttatctggaaatatcaccagtgatttaatcctagaaaatatcaaatctttaata
ggatgttttaacctggatcccaacagagttttggatattatcttggaggtgtatgagtgc
aggccggagtatgatgatttctttgtaccactgatagagtcttacatgtatatgtgtgaa
cctcaaaccctctgtcatatccttgggtttaaattcaaattttatcaggaaccaaatggc
gagacaccctgctccttatacagagtcgctgcagtgcttttgcaacataatcttatagat
ttggaagatctttatgtacatcttcttccagtagataatgccattctcgaagaacacaaa
cgagagattgtggaagctaagcagattgttagaaaacttacaatggtggttttatcttct
gaaaagactgaagagaaagagaaggaaaaggaaaaggaagaggagaaaactgaaaagcca
cctgacaaccagaaacttggcttattggaagctttattaaaaattggcgactggcagcac
gcacagagtattatggatcagatgcctccattttatgccacttcacacaaatctattgcc
attgccctctgccggcttgtacatgtgaccattgaacctctgtaccggagagttggagta
cctaaaggggctaaagggtcaccaatttcctctttgccaaacaagagagcaccaaaacaa
gcagaaagctttgaagacttgagaaaggaagtgttcaacatgctttgttatcttggtcct
catctttcccatgatcccattctttttgcaaaagtggtacgcttgggaaaagcatttatg
aaagagtttcagtctgatggaagcaaacaagaggaaaaagagaaaatggagattttgttt
agctgtttgttaagtattaccgaccaagtgttgcttccatctctttctttgatggactgt
aatgcatgtatgtccgaggaactctggggaatgttcaaaacttttccataccagtaccgg
tatcgtctctatggacagtggaagaatgaaacatacaacagccacccacttttagtgaaa
gttaaagctcaaactatagacagagccaaatatatcatgaagcgtctaaccaaggaaaat
gtgaagccttctggaagacaaattgggaagctgagtcacagcaatccaactatcttattt
gattatattttatcacagatacagaagtatgataatttaataacaccagtcgttgattca
ttgaaatacctcacttcactgaactatgatgtcttggcatattgcatcattgaagcactg
gcaaatcctgagaaggaaagaatgaagcatgatgacactacaatctctagctggctgcaa
agtctagctagtttttgtggtgcagtttttcgaaagtatccaattgaacttgctggcctt
cttcagtatgtggcaaaccaattaaaagctgggaaaagctttgatttgcttattttaaaa
gaggtggtacaaaaaatggctggaatagaaattacagaagagatgacaatggagcagcta
gaggccatgactggtggcgaacagctaaaagctgagggtggatattttggccagatcaga
aacacaaaaaaatcttctcagagattgaaagatgcattattggaccatgatcttgccctt
ccactgtgtctgctgatggctcaacagcgaaatggtgtgatctttcaggaaggaggagag
aaacatctgaagttggtaggaaagctgtatgatcagtgccatgatactctggtacagttt
ggtgggtttttagcatccaatctaagcacagaagattacattaagcgagtgccttctatt
gatgttctctgtaatgaatttcacacaccccatgatgctgcatttttcctgtcaaggcct
atgtatgcacatcatatttcgtcaaaatatgatgaacttaaaaaagccgaaaaggggaat
aaacagcagcacaaagttcacaaatacatcacatcgtgtgagatagtcatggctcctgtt
catgatgctgtgatctccttgcaccttcccaaggtttgggatgacatcagtccacagttc
tatgctacgttctggtcactgacaatgtatgaccttgctgttccgcataacagctatgag
agagaagtcaataaacttaaagtacagatgaaagctatagatgacaatcaggaaatgcct
ccaaataaaaagaagaaagagaaagaacgttgtacagctcttcaggacaagcttctcgag
gaggaaaagaaacagttggagcatgtgcagagggtgctacagaggctgaaactggaaaag
gatagttggcttttggcaaagtctaccaaaaatgaaactatcacaaaatttctacagctg
tgtatatttcctcggtgcattttttctgcaattgatgctgtttactgtgctcactttgta
gaactagtacatcaacagaaaactcccaatttttccacacttctctgttatgatagagtt
ttctctgatataatctatacagtagcaagttgcactgaaaatgaagccagtagatatggc
aggtttctatgctgcatgctagagactgtaactagatggcacagtgatagagtcatatat
gaaaaggaatgtggcaactacccaggttttcttaccatcttacgggcaactgggtttgat
ggtggaaacaaagctgaccagttagattatgagaattttcgacatgtcgtccacaaatgg
cactataaactaacaaaggcttctgtacactgccttgaaacaggagaatatacacatatc
agaaatatcttgattgtgttgaccaaaatccttccgtggtatccaaaagtgctgaatctg
ggccaagccttggaaagaagagtacataagatatgtcaggaagagaaagagaagagacct
gatctatatgcattggctatgggctattcggggcagttgaaaagtagaaagccttatatg
gtacctgaaaatgaattccatcacaaagaccctcctgccaggaatgctgtagctgcaaca
gtgcaaaatgggccaggtggtgctgggctgcctgcatcactcgcagttaatacagctaaa
ctggaagaaagcactgctgaggagactgataaattaaaggagaaatctcagggtgctatg
aaaattattagtaaagcagtcaatacaacacctaaggtgacgacaagcaacggaaacagt
gcttctaatagcaaagttattaaagaaaaagaagacaaagaaaaaggtgggaaggaaaaa
gataaagaaaaaaaagaaaagactccagctgccactccagaggccaaggcacttggaaag
gatgggaaagataaaccaaaggaagaacgggcaatcaaagatgataaagcaagagagacc
aaggaaaaaacaccaaagtctgacaaagagaaagaaaaaatcaagaaagaagagaaaacc
ccgaaagatgaaaaatccaagacagttgttatcagcattgagtcaaagtcagctgctgaa
aaggagagagaaaaggagccgtccagagaaagagatgtagcgaaggatatgaaatccaag
gaaaatattaaaggaggagaaaagatgccagtagttgggtccttgaagtcacctgttccc
cgatcagaaacatcagaatctgaaagggaacaaaaacgccgcaaagttgatacccattct
tctccatcacattcctcaacagtaaaggacaacctcagcgaactcaaggactcttcagca
aagcactacattaaccacactactccaacattgtccaagagtaaggagagagaagtggac
aagaaagatttggacaagtcaagggaaagatccagagagagagagaagaaagatgaaaag
gacaggaaagatcggaaaagggatcattcaaatagtgatcgggaggtgcagcaagattca
accaaaaggcgcaaagaggaaaatggaacaactggttcttccaaacatagtaaaagtgaa
agtccctctgactcacctcgttcaaatgaaaaggaaaaggaaaagaacaaatcaaaatct
tcagggaaagaaaaaggtgattcgatcaaagccgaaaagatggaaaaaagttcctctggt
agcaaaaaggagtccagacatgataaagaaaaaacagaaaaaaaagaaaagcgggacagc
acgggagggaaagaagaaaagaaacatcataaatcttcagacaagcacagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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