KEGG   Alligator mississippiensis (American alligator): 102573717
Entry
102573717         CDS       T03087                                 
Symbol
POLR2C
Name
(RefSeq) RNA polymerase II subunit C
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03020  RNA polymerase
amj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102573717 (POLR2C)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102573717 (POLR2C)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amj03021]
    102573717 (POLR2C)
   03400 DNA repair and recombination proteins [BR:amj03400]
    102573717 (POLR2C)
Transcription machinery [BR:amj03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     102573717 (POLR2C)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102573717 (POLR2C)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-GeneID: 102573717
NCBI-ProteinID: XP_006261724
UniProt: A0A151MSF9
Position
Un
AA seq 275 aa
MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH
DEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDL
ISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
GVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEDEAQAPYDPNGKPERFYYNVESCGSLR
PETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
NT seq 828 nt   +upstreamnt  +downstreamnt
atgccgtacgctaaccagcccacggtgcgcatcaccgagctcacggacgagaacgtcaag
ttcatcatcgagaacacggacctcgcggtggcgaattccatccgaagggtgttcatagcc
gaagtccccataatcgccattgactgggtccaaatagatgccaactcctctgtgctccat
gatgagttcattgcgcaccggctgggtctgatccctctcaccagtgatgacattgtggat
aagatgcaatactccagggattgcacatgtgatgagttttgtccagagtgttctgtggag
tttacccttgacgtccggtgtaatgaagaccagactcgtcacgtgacatcccgtgatctc
atctccaacaaccccagggttataccagtgacatcccgaagcagagacaatgatccaaat
gactatgtggagcaggatgatatccttattgtcaagttacggaaaggccaggagctgaga
ttgcgagcctatgccaagaagggcttcggcaaagagcatgccaaatggaatcccacagca
ggagtggcctttgagtatgacccagacaatgcactgaggcacacggtgtaccccaaacca
gaggaatggccaaagagtgaatactctgaaattgatgaagatgaggcccaggcgccctac
gatcctaatggaaagccagagaggttttattacaacgttgagtcctgtgggtccttgcgg
ccagagaccattgttctctctgcactgtccggactgaagaagaaattgagtgatctccaa
actcagctgagtcatgagatccagagcgacgtcttgaccataaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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