KEGG   Alligator mississippiensis (American alligator): 102574303
Entry
102574303         CDS       T03087                                 
Symbol
LSM3
Name
(RefSeq) LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03018  RNA degradation
amj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102574303 (LSM3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102574303 (LSM3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    102574303 (LSM3)
   03041 Spliceosome [BR:amj03041]
    102574303 (LSM3)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102574303 (LSM3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102574303 (LSM3)
Spliceosome [BR:amj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102574303 (LSM3)
 Complex C
  U2 snRNP components
    102574303 (LSM3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 102574303
NCBI-ProteinID: XP_006273162
UniProt: A0A151MK90
Position
Un
AA seq 102 aa
MADEVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgaggtggaccagcaacagacaaccaataccgtagaggagccgctggatctc
atcaggctcagtctagatgagcgaatctacgtgaaaatgaggaacgatcgagagctcaga
gggagattacatgcttatgatcaacacttaaatatgattttgggtgatgtggaagagact
gtaacaacaatagagattgatgaagaaacgtatgaagaaatttataaatctaccaagagg
aatattccgatgctctttgtcagaggtgatggcgtcgtgcttgtagctcctccgttgagg
gttggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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