KEGG   Alligator mississippiensis (American alligator): 106736850
Entry
106736850         CDS       T03087                                 
Symbol
HIF1A
Name
(RefSeq) hypoxia inducible factor 1 alpha subunit
  KO
K08268  hypoxia-inducible factor 1 alpha
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj04137  Mitophagy - animal
amj04140  Autophagy - animal
amj04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:amj00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    106736850 (HIF1A)
   04137 Mitophagy - animal
    106736850 (HIF1A)
   04148 Efferocytosis
    106736850 (HIF1A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:amj03000]
    106736850 (HIF1A)
Transcription factors [BR:amj03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    106736850 (HIF1A)
SSDB
Motif
Pfam: PAS_3 PAS_11 HIF-1a_CTAD PAS HIF-1 PAS_9 PAS_4 HLH
Other DBs
NCBI-GeneID: 106736850
NCBI-ProteinID: XP_014450632
Position
Un
AA seq 871 aa
MKMCEKLSSASSFLKKSSFGYKAFQGMKKWGGGPSGKIRFHSHYLHADTGLACASYCLPV
SLRNWHFPSHSRISSERRKEKSRDAARCRRSKESEVFFELAHQLPLPHTVSAHLDKASIM
RLTISYLRMRKLLDTGDMETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCM
GLTQFDLTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHIRVYDTCNNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSK
TFLSRHSLDMKFSYCDERITELMGYESEELLGRSVYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTECM
LKPVERPDTKTTQIFKTDVEDTNSLFEKLKQEPDALTLLAPAAGDTIISLDFSSNESDEQ
QCDEVPLYNDVMLPSSSEKLQSINLAMSPLPASETPKPLRSNADPALNREVVSKLEPNTE
PLDLSFTIPQMQETPDSPSDASTSQSSPEPSSPNGYCFDVDNEMANEFKLELVEKFFAID
TEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESASAGSQNTATITIFQQTQ
TPAITPDEIKPVSTERMDDVKTLIVSSSPVHIKSETSSAPASPYGGTRSRTASPIRAGKG
MLDPTEKLCPGTPSLLTVTLSKRSTAVDEELSPKMLALHNAQRKRKMEHDGSLFQAVGIG
SLFQSSGDCGPNASLSWKRVKGCKRNGHNGVEQKTVILLSTDIASKLLGQSMDESGLPQL
TSYDCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq 2616 nt   +upstreamnt  +downstreamnt
atgaaaatgtgtgaaaagctcagtagcgcttcaagctttctgaagaaaagctcatttggg
tacaaggctttccagggaatgaagaagtggggaggaggcccatccggcaagattaggttc
cactctcactacctgcatgcagatacaggcttggcatgtgcaagttattgcctgcctgtg
tctttgagaaattggcattttccatctcactccagaattagttcagaacgcagaaaggag
aaatccagagatgcagccagatgccgaagaagcaaggaatccgaagtcttctttgaactt
gctcatcagctgcctttacctcacacggtgagcgcacatctggataaggcctccattatg
agactgaccatcagctacttgcgcatgagaaagctgttggatactggtgacatggagaca
gaagccaaaatggaaaaggagctgaactgcttttacttaaaagcccttgatggatttgtt
atggtgctttctgaagatggcgacatgatttacatgtctgaaaacgtgaacaagtgtatg
ggcctcacacagtttgatctgactggacacagtgtgttcgattttactcatccttgtgac
catgaggagttgagagaaatgcttactcacagaaatggtcctgtgaaaaagggcaaagaa
cagaacacagagcgtagttttttcctccgaatgaagtgtacgctgactagcaggggaagg
acggtgaatataaaatctgcaacatggaaggtactgcattgcacagggcatattcgtgtg
tatgacacatgcaacaatcagactcactgcgggtataaaaagcctcctatgacatgcttg
gtgctgatctgcgaacctattccacatccatcaaatattgaggttcccttggacagcaag
acattcctcagtcgtcacagtcttgatatgaagttttcctattgtgatgaaagaattaca
gagctgatgggatatgagtcagaggaactattgggtcgctccgtctatgaatactatcat
gccctggattctgatcatctgaccaaaacgcaccacgacatgttcacaaaggggcaggtg
accacaggacagtacagaatgcttgctaaacaaggtggatatgtttgggttgaaactcaa
gcaactgttatatacaacactaagaactcgcaaccacagtgcattgtgtgtgtaaactac
gtattgagtggtattgtccagaaggacttgattttctcccttggacaaactgaatgcatg
ttgaaaccagtggagcgccctgacacgaaaacgacccaaatattcaagactgatgtggaa
gataccaacagtctctttgagaaactcaaacaggaaccagatgctttaacactgttggca
ccagctgctggagatacaattatctcgctagatttcagcagtaatgagtctgatgagcaa
caatgtgatgaagttcctttgtataatgatgtaatgctcccctcatccagtgagaaattg
cagagtataaatttggcaatgtccccactacctgcttctgaaactccaaagccacttcgt
agcaatgctgaccctgcactcaatagagaagttgtgtcaaagctggagccaaacacggaa
ccactagacctctcatttaccatccctcagatgcaagaaacgcctgacagtcctagtgat
gcgagtaccagccaaagttcacctgagcccagtagtccaaacggctattgctttgatgtg
gataatgagatggctaatgaatttaaactggaattagtggaaaaattctttgcgatagac
acagaagcgaaaaatccattctctactcaggaaacggatttagacttggaaatgttagct
ccatacatcccaatggatgacgacttccagttacgctcctttgatcagctttctccactg
gagagcgcgtctgctggctcacagaatacagccaccatcaccatatttcagcaaactcag
accccagctattactcctgacgaaatcaagccagtgtcgacagaacgcatggatgacgtg
aaaacgctaattgtttcttcatctccagtccatataaaaagtgaaaccagcagtgcgcca
gcatcaccgtatggtgggactcgaagccgaactgcctctccaatcagagcagggaagggg
atgttagacccgacggagaaattgtgtccaggaacgcccagtttgttaacagttacttta
agtaaaaggtctacggcagtggacgaggagctgagccccaaaatgctagctttgcataat
gctcaaagaaaacgaaaaatggaacatgacggttctctctttcaagcagttggaattggg
tctttattccagtcgtcaggtgattgtggaccaaacgcatcgctttcttggaaacgtgta
aaaggctgcaaacgtaacggccacaatggagtggagcaaaagacggtcattctgctatcg
acggatatagcaagtaagctcctagggcagtcgatggatgagagtggactaccacaactt
acaagttatgactgcgaagtaaacgctcccatacaaggcaacagaaacctgctacaaggt
gaagaattgctcagagctctggatcaagttaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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