KEGG   Alligator mississippiensis (American alligator): 106737139
Entry
106737139         CDS       T03087                                 
Symbol
CNOT6L
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 like
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106737139 (CNOT6L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    106737139 (CNOT6L)
Enzymes [BR:amj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     106737139 (CNOT6L)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106737139 (CNOT6L)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     106737139 (CNOT6L)
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 LRR_9
Other DBs
NCBI-GeneID: 106737139
NCBI-ProteinID: XP_019353736
UniProt: A0A151MPT5
Position
Un
AA seq 568 aa
MLQDLSVWAGIWHPRLTGMPKEKYDPPDPRRIYTIMSAEELANGKKSHWAELEISGRVRS
LSTSLWSLTHLTALHLNDNNLTRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLREL
LLNNNLLRVLPYELGRLFQLQTLGLKGNPLSQDILSLYQDPDGTRKLLNYMLDNLAVHPE
QLPARPWITLKERDQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEE
IVHCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQEKKHVDGCAIFF
KTEKFTLVQKHTVEFNQVAMANSEGSEAMLNRVMTKDNIGVAVVLEVHKELFATGIKALH
AVDRQLLIVANAHMHWDPEYSDVKLIQTMMFVSELKNILERASSRPGSPTADPNSIPLVL
CADLNSLPDSGVVEYLSNGIVADNHKDFKELRYNECLMNFSGNGKNGASEGRITHGFQLK
SAYENNLMPYTNYTFDFKGVIDYIFYSNTHMNVLGVLGPLDPQWLVENNITGCPHPHIPS
DHFSLLTHLELHPPLLPLVNGVHLPNRR
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgctgcaggacctttctgtttgggctggcatttggcatcccagactaacagggatgcca
aaggaaaaatatgatcctccggatcctcgcagaatttataccatcatgtcagcagaggag
ttagccaatgggaagaagtctcactgggcagaattagaaatctcgggtagagtgcggagt
ttaagtacatcactttggtcactgacgcacttgactgctcttcacctcaatgacaataat
cttactcgcattccacctgatattgccaagctccataatctggtttacctggatttgtca
tccaacaaacttagaagtttaccagcagaactaggaaacatggtatctctcagggaattg
cttttaaataacaatctgttacgggttttgccttatgaacttggacggctcttccagcta
caaaccctaggtttgaaaggcaatcctttatcgcaggatattctcagtctgtaccaggac
ccagatggaacacgtaagctactgaactacatgcttgacaatctagcagttcatccagag
cagttgcctgcaaggccatggattactttaaaagaacgagaccaaattctgccctcagct
tcattcacagttatgtgttacaatgtattgtgtgataaatatgccacccggcagctatat
ggctactgcccatcctgggcattaaattgggagtataggaaaaagggaatcatggaagaa
atcgtgcattgtgatgcagatatcattagtcttcaggaagtggaaacagagcaatacttc
accctctttctgccagcattaaaagagcgtggatatgatggatttttctctccaaagtca
cgtgccaaaatcatgtctgagcaggagaaaaagcatgtggacggctgtgcaatattcttc
aagacagagaaattcacattggtgcagaagcacaccgtggagttcaaccaggtagcaatg
gccaactctgaaggttcagaagctatgctaaacagagtcatgacgaaggacaacattgga
gttgctgtggtgctagaggtgcacaaagaattatttgcaacaggtataaaggctcttcat
gctgtggacagacagctgcttattgtggcaaatgcccacatgcactgggaccctgaatac
tcagatgtgaaacttattcagactatgatgtttgtctcagaactgaaaaatatccttgag
agagcctctagcaggcctggtagcccaacagcagatcctaattctattcctctggtgctg
tgcgcggatcttaactccttgcctgattcaggtgttgtggaatacttaagcaatggtata
gtagctgacaaccataaggacttcaaagagttgcgttacaatgagtgtctcatgaacttc
agtggtaatggaaaaaatggagcttctgaaggaagaatcacacatggcttccagcttaag
agcgcctatgaaaacaacttgatgccttacaccaattacacttttgatttcaaaggtgta
attgactacattttctattccaacactcatatgaacgtgcttggtgtcctcgggcctttg
gatcctcagtggctggttgagaacaacatcactgggtgtcctcaccctcacatcccttca
gaccacttctcactgttaacacacctcgaactccaccctccactcctgcctcttgtcaac
ggtgttcacttaccaaacaggaggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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