KEGG   Alteromonas macleodii Black Sea 11: AMBLS11_03970
Entry
AMBLS11_03970     CDS       T02260                                 
Name
(GenBank) exonuclease SbcC
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
amk  Alteromonas macleodii Black Sea 11
Brite
KEGG Orthology (KO) [BR:amk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amk03400]
    AMBLS11_03970
DNA repair and recombination proteins [BR:amk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AMBLS11_03970
    Archaeal homologous recombinant proteins
     AMBLS11_03970
SSDB
Motif
Pfam: AAA_23 SbcC_Walker_B AAA_21 AAA_29 SMC_N ABC_tran Laminin_II HrpB7 cobW nSTAND3 NTPase_1 Ribosomal_L17 AAA_22 AAA_25
Other DBs
NCBI-ProteinID: AFT77384
Position
931695..935432
AA seq 1245 aa
MRILTLRLKNLNALKGEWKIDFTQSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LGPISTSNNDIMTRGTAECLAEVEFDIKGKAYRAFWSMRRARGKVDGNLQSADVELAEVE
SGKVLATQVRPKSEEIEKLTGLNFARFTKSMMLSQGDFAAFLNANEADRAELLEELTGTE
IYGQISQAVHQQFSDAKQKKKEFAIKLEGVTLLSDEQITQLEEEQAQTKSQVATSNQTLV
QLQKQQQWQQAFNANELSIKEASEAQQSANNAINEAKHELELLTQSEPAEKLRLPFLQRN
GLQQDVTRYKERLEEKAAQLPDLKSQKAQLSLEVTNAEQALVLTKQQSSELEKRINEQVV
PLDNQIAQLTTEQQKANENAARLKQSINALTLKRTEIENASADNKTKLGELETYLREHQS
LSGIAEFISGWSETARHIEHDKKQLETLTQSVNNHRQALSSLDDAIAKTNESLSALTQTF
DDKNAQVAKCEKALQAALSDKPSDTNSANATSKASLQQERDTKLHHWDNVLQIGHIQQQY
LALEQEKVSLGAQKEDLAKKLAQQQSDRQALVDAYKQTRSNLKDIEALIALDAEVAHLRA
QLKSGEPCPVCGANEHTTSSVVIDVPETIQKRDSLKQQLDDIEQQGARAKESVTQTEFTL
AQVNKQLEQASGQRDTLLEKWQQISSVLSADISSFEKVDINTSQSVAQFTQQFKTRLDDI
SAQLTRLEECEQALNAALQAKNEAQQALQAKQSELAVSLQQRETFEKQLTERNTELENKT
KRVNDGILALSETMTAHGADIHNLSIDGIATWLNEKAEALKTYKHNHQLHAKLKDELQGV
SSALLVVSRDIESAENQLKGVCEELLQLDNSLKALRDSRSTVFPEGNIAETRNKASAAQE
HAERNVNECKSRLQQTDTILSRLEAEIAQLNEQMREKEQALSEATEHFSRQLASSPFADE
HAFSNALLDEDARNTLLELQKRLTQQKQQADLKLENALATQQSLKAHTNAALWQSELEEH
GAQWLDTKITQQAQQRDTLLSSLGQIEQQLSANNQARERQQQLVDEMAAFEAYYDDITYL
HSLIGSASGDKFRRFAQGLTLDNLVQLANQQLDKLHGRYQLIRKENEGLGLSVLDTWQGD
VVRDTKTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDVALDALDN
LNASGKMIGVISHIEAMKERIPTQLKVIKRNGVGLSALEKPYAVG
NT seq 3738 nt   +upstreamnt  +downstreamnt
atgagaatattgaccttacgccttaaaaatctaaacgccttaaaaggggagtggaagata
gattttacccagtcgccgtttatcgacaatggcctgtttgctatcacgggtccaacaggg
gcaggtaaaaccaccctacttgatgccatttgtttagcgctttatcaccaaacccctcgc
ttggggccaatttcaacgtctaacaacgacatcatgacccgcggcacggcggagtgtttg
gcggaggttgagttcgatattaaagggaaagcataccgtgcgttttggagtatgcgtcgg
gccagagggaaagttgacggtaacctgcaaagtgccgatgttgagctggccgaagttgaa
agcggcaaggtattggctacccaagttaggccgaaaagcgaagagattgaaaagctgact
ggtcttaactttgcccgtttcaccaagtctatgatgttgtcgcaaggggattttgctgcg
tttttaaatgctaacgaggccgaccgagccgagctgcttgaagagttaactggcaccgaa
atttacgggcagatatcacaggcagtacatcagcaatttagtgacgctaaacaaaagaaa
aaagagtttgcgataaagctagaaggcgtaaccttgcttagcgacgagcaaatcacccag
cttgaagaagagcaagcacaaaccaagagccaagtcgcaacgtctaaccaaacacttgtt
cagttacaaaagcaacagcagtggcaacaagcgtttaacgccaatgagctctccattaaa
gaagccagtgaagcgcagcagagcgcgaataacgccatcaatgaggcgaagcatgagctt
gaactcctaacccaaagtgagccagctgaaaagcttcgcctgccatttttgcaaagaaac
gggcttcagcaagacgtaacccgttataaagaaaggcttgaagagaaagcagcccagttg
ccagacttaaaatcgcaaaaggcacagctcagtttggaagtgaccaacgctgaacaagcg
ttagttcttacaaagcaacaaagcagtgagcttgaaaagcgcataaatgagcaggtagtt
ccgctagataaccaaatagcgcagctcactactgaacagcaaaaagcaaacgaaaacgcg
gcacgtttaaagcaatcaataaacgcgttaacgctaaagcgcacagaaatcgaaaacgct
tcggcagataacaagaccaagcttggtgaactggaaacctacttacgtgaacatcaatca
cttagcggcatagcggaatttataagtggctggagtgaaacggcgcgccatattgaacat
gataaaaagcagttagaaacactgacacaaagcgtaaataatcatcgtcaggcgctttca
tccctagatgacgctatcgcaaaaacaaatgagtcgttaagcgcgttaacgcagaccttc
gatgacaaaaacgcgcaagtagccaagtgcgaaaaggcacttcaggccgcgctatctgac
aaaccaagtgatactaatagtgctaatgcaaccagtaaagcaagccttcagcaagagcgt
gataccaagcttcatcattgggataacgtattacagatagggcatattcaacagcaatat
ttggcactagaacaagagaaagtatcgctgggtgcgcaaaaggaagacttagcgaagaaa
ctagctcagcagcaatctgaccgccaagccttggttgatgcttacaagcaaactcgtagt
aatttaaaagacatagaggcgcttattgccttggatgctgaagtggcgcacctgcgcgca
cagttaaaaagtggcgagccatgccctgtctgtggggctaacgaacacaccacgtctagc
gtggttattgatgtacctgaaactatccaaaagcgagatagcttaaagcagcagttagat
gatattgagcagcagggggcgcgggcaaaagaaagtgttacacaaactgaattcactctt
gctcaggttaataagcagctagaacaggcaagcgggcaacgagatacgctgctagaaaag
tggcagcagatttcaagcgtacttagcgctgatatatcgagttttgaaaaggtcgacatt
aatacatcgcaaagcgtcgctcaatttacccagcagtttaaaactcgtctcgatgatatt
agtgctcaattaacgcgtttagaagagtgcgagcaagctctaaatgctgcactgcaggct
aaaaatgaagcgcaacaggcattacaagccaagcagtcagaacttgcagtttctctgcag
cagcgcgaaacctttgaaaagcaacttaccgaacgtaatacagagttggagaacaaaaca
aaaagggttaacgatggtattttagcgctcagcgagactatgacggcgcacggtgctgat
attcacaacctgtctattgatggaattgccacgtggttaaatgaaaaagccgaagcgcta
aaaacttataaacacaatcatcagctacacgccaaacttaaagatgagttgcaaggggta
agtagcgccttgcttgtggtcagtcgtgatatcgaaagcgctgagaatcagcttaagggc
gtatgcgaagagcttctgcagctagataatagcctaaaggcgctgcgagactcgcgctca
accgtattccctgaaggcaatattgctgaaaccagaaataaggcaagcgctgcccaagaa
cacgctgagcgaaatgtaaatgaatgcaaatctcgcctgcaacaaacggacactattttg
tctcgtttagaagcagaaattgcccagcttaatgagcaaatgcgcgaaaaagagcaggca
ctttcagaggcaacagagcactttagccgtcagttggcgagcagcccatttgccgatgag
cacgcgtttagcaatgcccttttagacgaagatgcccgcaacaccttgcttgaactgcaa
aagcgattaactcagcaaaaacaacaagcggacttaaagctagaaaacgcgctagctacc
caacaatcgctaaaagcccatactaacgcagcattgtggcagagcgagttagaagagcac
ggtgcacagtggctcgatacgaaaattacccagcaagctcagcagcgtgacacgctgtta
tcgtctttagggcaaatagaacagcagctaagcgctaacaatcaagcccgcgaaaggcag
cagcagcttgtggatgagatggccgcgtttgaggcctattacgacgatattacttacctg
cactcgttaattggttcggccagcggcgacaaattcagacgttttgctcaagggcttact
ctggacaacttagtgcagcttgcaaatcagcagcttgataaattacacggtcgctatcag
ctaattcgaaaagaaaatgaagggttgggtttaagtgtattagacacctggcaaggtgac
gtagtgcgagataccaaaaccctgtctggcggagaaagtttcttagtgagcctagcgctg
gcattagctttatctgacttggtcagtcacaagaccagtatcgattcgctgtttttagat
gaaggctttggcacccttgatgctgaaactttagatgtggcccttgatgcgctagacaac
ctaaatgccagcggaaaaatgattggtgtgataagccatattgaagccatgaaagagcgt
attcctactcagcttaaagtgattaaacgcaacggtgtggggttaagtgcgctagaaaaa
ccttatgcggtggggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (14)   
   Pfam (14)   
All databases (20)   

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