KEGG   Alteromonas macleodii Black Sea 11: AMBLS11_15420
Entry
AMBLS11_15420     CDS       T02260                                 
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
amk  Alteromonas macleodii Black Sea 11
Pathway
amk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AMBLS11_15420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amk03019]
    AMBLS11_15420
Messenger RNA biogenesis [BR:amk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AMBLS11_15420
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 ERCC3_RAD25_C P-loop_SecA AAA_25 Gag_p24 AAA_22
Other DBs
NCBI-ProteinID: AFT79653
Position
complement(3622650..3624101)
AA seq 483 aa
MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL
QRLMSGQPVSGNNVRALILTPTRELAAQVEESISAFSEFLPLKTAVVFGGVGINPQMMKL
RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQ
SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVEQHLVTIDKSKKTTALICLIKQ
QKWEQVLVFSRTKHGANRIAEKLSRSKIPSAAIHGNKSQGARTKALADFKSGAIKVLVAT
DIAARGIDISELPIVVNLDLPNTPADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET
LIQKLLPRETLEGFEPQQAVPATTLSKPKKPKKPKKPKAPQGEDLSEGKRSGDNKKAGQR
QGNRGGNGNSRTGKPNARNNNGGKPAGQRRSGSEGNAARRPAKRRSNPSNGTPGNKVSNN
AKA
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgtcatttacccaattagggctcgctgaacccttgttaaaagctattgaaaaacgagga
tttagcacaccatcacctatccaagaaaaggcgataccagaagtattgcagggaaaggat
gtgttggcagctgcgcaaacgggaacagggaaaactgcgggatttggacttcctatttta
cagagactgatgtcaggacaacctgtgtctggcaataatgttcgagcacttatcttaacg
cccacgcgtgagcttgctgctcaggtagaagaaagcattagcgcgttcagtgagtttttg
ccgttaaaaaccgctgtcgtttttggtggagtgggcattaaccctcaaatgatgaagctt
cgtaaaggggttgatgtgttaattgctacacctggtcgattactcgatctgtaccagcaa
aacgcagttaagttttctcagcttgaagtgttggtattggatgaagccgacagaatgcta
gatatgggctttattcacgacattaaaagagtactgaaactattgccacaagagcgtcaa
agcttacttttctcagccacattttctgatgaaatcactgcgctggcgaaaactataacg
cgcaaccctgtgagtatttcaaccgcgcctgccaataccacggtagaagctgttgagcag
catttggtaactatagataaatctaaaaagacaactgcgcttatttgcctgatcaaacag
caaaagtgggagcaggtgttagtatttagccgtactaaacatggcgctaaccgtattgca
gaaaaattaagccgctcaaaaattccaagtgccgctattcacggtaataaaagtcaggga
gcgagaaccaaagcccttgctgattttaaaagtggcgctattaaagtattggtggcaacg
gatattgctgcacgcggcatcgacatcagtgaactccccattgttgttaacttagactta
cctaatacaccggccgattatgttcacagaattggtcgtacaggccgtgccggcgctagc
ggacaggcttggtcatttgtgtgtgccgaagagctacagaacctgaaagatattgaaacg
cttattcaaaagctgcttccgcgtgaaacgttggaaggttttgagccacagcaggccgtg
cctgctaccacgctgtctaagccgaaaaaacctaaaaagcccaaaaagccaaaagcacca
caaggtgaggaccttagcgaaggcaaacgaagtggcgataataagaaagcgggtcaacgc
caaggcaatcgtggcggaaatgggaactcgcgtaccggtaaaccgaatgcgcgtaacaat
aatggtggaaagcctgcaggtcaaagacgttcaggtagcgaaggtaatgccgctagacga
ccagctaaacgcagaagcaacccttctaatggcacgcctggtaacaaggtctcaaacaac
gcaaaagcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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