KEGG   Ailuropoda melanoleuca (giant panda): 100484375
Entry
100484375         CDS       T01329                                 
Symbol
CASC3
Name
(RefSeq) protein CASC3
  KO
K14323  protein CASC3
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03013  Nucleocytoplasmic transport
aml03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100484375 (CASC3)
   03015 mRNA surveillance pathway
    100484375 (CASC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aml03019]
    100484375 (CASC3)
Messenger RNA biogenesis [BR:aml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100484375 (CASC3)
SSDB
Motif
Pfam: Btz
Other DBs
NCBI-GeneID: 100484375
NCBI-ProteinID: XP_002924977
Ensembl: ENSAMEG00000007764
UniProt: A0A7N5KPL0
Position
13:24518143..24539655
AA seq 702 aa
MADRRRQRASQDTEDEESGASGSDSGGSPARGGGSCSGSAGGGGSGSLPSQRGGRTGALH
LRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEAN
DAANSSAKEEKGEEKPDTKGTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPA
YIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALY
GYDIRSAHNPDDIKPRRIRKPRFGSPPQRDPNWIVERPNKSHRHQGGGTLPPRTFINRNA
AGTGRMSAPRNYSRSGGFKEGRAGFRPVEAGGQHGGRSGETVKHESSYRSRRLEQTPVRD
PSPEADAQVLGSPEKEEAASEVPAAAPDAAPPAPDRPVEKKSYSRARRTRIKAGDAVKVA
EDVPPPPEGLNPAPQVPETTPPPPAKTGSWEAPVDSTTSGLEQDVAQLNITEQNWSPGQP
SFLQPRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHIS
IMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLPNPGLYP
PPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQVY
GGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS
NT seq 2109 nt   +upstreamnt  +downstreamnt
atggcggatcggcggcggcagcgcgcttcgcaggacacggaggacgaggagtctggtgct
tcgggctcagacagcggcggctccccggcgcggggcggcgggagctgcagcggtagcgcc
ggaggcggtggcagcggctctttgccttcccaacgcggaggccgaactggggcccttcat
ttgcggcgggtggagagcgggggggctaagagcgctgaggagtcggaatgtgagagtgaa
gatggcatcgagggcgatgctgttctgtcggattatgaaagtgcagaagactctgaaggt
gaggaaggggaatacagtgaagaggaaaactccaaagtagagctgaaatcagaagccaat
gatgctgctaattcttcagcaaaagaagagaagggagaagaaaagcctgacaccaaaggc
actgtgactggagagaggcagagtggggatggacaggagagtacagaacctgtggagaac
aaagtgggtaaaaagggtcctaagcatttggatgatgatgaagatcggaagaacccagca
tacataccccggaaagggctcttctttgagcatgatcttcgagggcaaacgcaggaggag
gaagtcagacccaaggggcgtcagcgaaagctatggaaagatgagggtcgctgggagcat
gacaagttccgggaagatgaacaagctccaaagtcccgacaggagctcattgctctttat
ggctatgacatccgctcagctcacaatcctgacgacatcaaaccccgaagaatccggaaa
cccaggtttgggagtcctccacaaagagatccaaactggattgttgagcggccaaacaag
tcccatcgccaccagggtgggggcaccctaccaccaaggacatttatcaacaggaatgct
gcagggactggccgaatgtctgctcccaggaattactctcgatctgggggcttcaaggaa
ggtcgtgctggttttaggcctgtggaggctggtgggcagcacggtggccggtctggtgag
actgttaaacatgaaagcagttaccgatcacggcgcctagagcagactcctgtgagggac
ccatctccagaagctgatgctcaagtgctgggcagtcccgagaaggaagaggcggcctca
gaggtaccagctgctgctcccgatgctgcaccgccggcccctgacaggcctgtcgagaag
aaatcctactcccgggcaagaagaaccagaatcaaagctggagatgcagtcaaggttgcg
gaggacgtgccccctccacccgaagggttgaacccggcacctcaagtcccagaaacgacc
cctcctccacctgctaagactggaagctgggaggctccagtggattctactacaagtgga
ctcgagcaagatgtggcacaactaaatataaccgaacagaattggagtccagggcagcct
tcattcctgcagccacgtgagcttcggggtatgcctaaccacatacacatgggagcagga
cctccacctcagtttaaccggatggaagaaatgggtgtccagggtggacgagccaaacgc
tattcatctcagcggcaaagacccgtgccagagccccctgctcctcctgtgcacatcagt
atcatggagggacattactatgatccattgcagttccagggaccaatctatacccatggt
gacagccctgccccactgcctcctcagggcatgattgtgcagccagaaatgcaccttccc
cacccaggtttacatccccaccagacaccggcccctctgcccaatccgggtctctatccc
ccaccagtgtccatgtctccgggacagccgccaccgcagcagctgcttgctcctacttac
ttttctgctccaggcgtcatgaactttggtaatcccagttacccttatgctccaggggca
ctgcctcccccaccacctcctcatctatatcctaatacacaggccccatcacaggtatat
ggaggagtgacctactataaccccgcccagcagcaggtgcagccaaagccctcccccccc
cggaggactccccagccagtcaccatcaaacccccaccacctgaggttgtaagcaggggt
tccagttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (30)   

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