KEGG   Amycolatopsis mediterranei S699: AMES_0655
Entry
AMES_0655         CDS       T02190                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
amm  Amycolatopsis mediterranei S699
Pathway
amm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AMES_0655 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amm03021]
    AMES_0655 (rpoC)
   03400 DNA repair and recombination proteins [BR:amm03400]
    AMES_0655 (rpoC)
Enzymes [BR:amm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AMES_0655 (rpoC)
Transcription machinery [BR:amm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AMES_0655 (rpoC)
DNA repair and recombination proteins [BR:amm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AMES_0655 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 ART
Other DBs
NCBI-ProteinID: AFO74191
Position
729945..733856
AA seq 1303 aa
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAALEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDTRQLIADELL
YRELVDRYGEYFTGGMGAEAIQKLATEFDVSAEADNLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLTETAEGAGN
AYSSPAEAIMAYDRKALSLHAPVKIRITDRQPAKADEARLAEKGWEPGKAWLAETTLGRV
LFNELLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
AISDVLTPVGKKAILDEYEGKASQVEKRYQRGQLSHAERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTTRGIMMPIGEDIGDGKVL
RDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPAIDKLLSSGISKVKVRSVLTCESV
VGICATCYGRSMATGLLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VQELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGGEEIVFDKLSKRQRLANTP
NGPLGDGDHVHVGQQLLEGTPDPHEVLRVMGPREAQIHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATDFLPGELPERTKFEATNRAAVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq 3912 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaactttttcgatgagctccgcattggtctcgccacggccgacgacatc
cgtcagtggtcgtacggcgaggtcaagaagccggagaccatcaactaccggacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgttccctcccgcctgggctacctgctggacctg
gcgccgaaggacctcgagaagatcatctacttcgcggcttacgtcatcaccggcgtgaac
acggagctgcgccacaacgacctgccgaccctcgagaacgagatcggcgtcgagcgcaag
aacctcgagaccaagcgtgacgccgacatcgaggcgcgtgcgcagaagctcgaagccgac
ctggccgcgctggaggcggagggcgccaagtccgacgtccgccgcaaggtcaaggagggc
ggcgagcgcgagatgcgccagctgcgcgaccgcgccggccgcgagctggaccgcctcgag
gaggtctggacgaccttcacgaagctcgacacccgccagctgatcgccgacgagctgctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtctccgcggaggcagacaacctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgcgctgaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgcggcatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgcgacgtcggacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcgggcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgctcgcgg
ccgcaggtgtgggacgtgctggaagaggtcatcaccggccacccggtgatgctgaaccgc
gcgccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcggcgaacaacatcctgtcgccggcgtcgggccgcccgctcgccatgccgcggctggac
atggtcaccggcctgttccacctgacccgcctcaccgagacggccgagggcgcgggcaac
gcgtactcgtcgccggccgaggcgatcatggcctacgaccgcaaggcgctgagcctgcac
gctccggtcaagatccgcatcaccgaccgtcagccggcgaaggccgacgaggcgcggctc
gcggagaagggctgggagccgggcaaggcgtggctggccgagacgaccctgggccgcgtg
ctcttcaacgagctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cggcaggccgcgatcgtgaacgacctcgccgagcggtactcgatgacgcaggtcgcgcag
accctggaccgcctcaaggacgccggtttctactgggcgacccgctcgggcgtcaccgtc
gccatctcggacgtgctcaccccggtgggcaagaaggccatcctcgacgagtacgagggc
aaggcctcccaggtcgagaagcgctaccagcgtggtcagctgtcgcacgccgagcggaac
aacgagctcgtcaaggtgtggacgcaggccaccgaagaggtccacaagatcatggagacg
gcgctaccggacgacaacccgatcgccatgatcgtgaagtcgggtgccgccggtaacatg
acgcaggtccggtccctggccggtatgcgtggcctggtgtcgaacccgaagggtgagtac
atcccgcgtccgatcaaggccaacttccgtgagggcctgtcggtggcggagtacttcatc
gccacgcacggtgcccggaagggcctggcggacacggcgctgcggaccgccgactcgggt
tacctgacccggcgtctggtggacgtctcgcaggacgtcatcgtccgcgagaccgactgc
ggcaccacccgcggcatcatgatgccgatcggcgaggacatcggcgacggcaaggtcctg
cgcgaccagcacgtcgagacctccgtgtacgcgcggaacctcgcgacggacgcggtggac
gccaagggcaacgtcgtgctgaacgccggcgacgacatcggcgacccggccatcgacaag
ctgctctccagcggcatctcgaaggtcaaggtccgctcggtgctgacctgcgagtcggtc
gtcggtatctgcgcgacctgctacggccgctcgatggcgaccggtctgctcgtcgacgtc
ggcgaggcggtgggtatcgtcgccgcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtggccggtgacgacatcacgaccggtctgccgcgt
gtccaggagctgttcgaggcccgcgtcccgaagggcaaggcgcccatcgccgacgtcgac
ggccgcgtgcggatcgaggagagcgagcggttctggaagatcaccctcatcccggacgac
gggggcgaggagatcgtcttcgacaagctgtccaagcggcagcggctcgcgaacaccccg
aacggcccgctgggcgacggtgaccacgtgcacgtcggccagcagctgctcgagggcacg
ccggacccgcacgaggtgctgcgggtcatggggccgcgcgaggcgcagatccacctggtg
gacgaggtccagaaggtgtaccgggcgcagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtccggcagatgctgcgccgggtgacgatcatcgactccggggccacggacttc
ctgccgggcgagctgcccgagcggaccaagttcgaggcgacgaaccgggccgcggtcgcc
gaaggcggcgagccggcttcgggccgtccggtgctgatggggatcacgaaggcgtcgctc
accacggactcgtggctgtcggcggcgtcgttccaggagaccacgcgagtcctgaccgac
gcggcgatcaacggccgctcggacaagctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggccggtacgggcatcaacaagtaccgcaacatccaggtgcagccgacc
gaggaggcccgggtcgcggcgtacgcgatcccgtcctacgacgacggttactacaccccg
gacgtgttcggtacgggtaccggtgccgcggttccgctggacgactacgacttcggccgc
gacttccgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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