KEGG   Amycolatopsis mediterranei S699: AMES_4147
Entry
AMES_4147         CDS       T02190                                 
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amm  Amycolatopsis mediterranei S699
Pathway
amm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMES_4147 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amm03400]
    AMES_4147 (lig)
Enzymes [BR:amm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMES_4147 (lig)
DNA repair and recombination proteins [BR:amm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMES_4147 (lig)
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: AFO77683
Position
4616875..4617774
AA seq 299 aa
MQVGERRLTLSNLEKVLYPRPGFTKGEVLDYYTRIAPVLLPHVRDRAMTFVRFPEGVTGT
SFFEKDVSRHAPDWVRTARLTVGGRGKEPEIVAYPLINDLPELVWAANLAALELHVHQWT
VGPGDERSTPDRLVFDLDPGPGATVVDCCRVAERLHDVLVEDGLTPVAKTSGSKGMQLYA
GIVTTDGGEPSQYAKALAERLAAETPDLVVARMTKNLRPGKVFIDWSQNNPFKTTVAPYS
LRGRDEPTVSAPVTWDEVRACRHVTHLRFTAGEVLARVEDIGDLFADLERTRVPILAFG
NT seq 900 nt   +upstreamnt  +downstreamnt
gtgcaggtcggcgagcgccggctgacgctgtcgaacctcgagaaggtgctctacccgcgg
cccggcttcaccaagggcgaggtgctcgactactacacgcggatcgcgccggttttgctg
ccgcacgtgcgcgaccgggcgatgacgttcgtgcggttccccgagggcgtcaccggcacc
tcgttcttcgagaaggacgtctcccggcacgcgccggactgggtccgcaccgcgcgcctg
accgtcggcggccgcggcaaggagcccgagatcgtcgcgtacccgctgatcaacgacctg
cccgagctcgtctgggcggccaacctcgccgccctcgaactgcacgtccaccagtggacc
gtcgggcccggcgacgagcgcagcaccccggaccggctggtgttcgacctcgacccggga
cccggcgcgacggttgtcgactgctgccgggtcgccgaacggctccacgacgtcctcgtc
gaggacgggctcaccccggttgcgaagaccagcggctccaaaggcatgcagctgtacgcg
ggcatcgtgacgacggacggcggtgagccgtcgcagtacgccaaggcgctggccgagcgg
ctcgccgccgagacgccggacctcgtcgtggcgcggatgacgaagaacctgcgcccgggc
aaggtcttcatcgactggagccagaacaacccgttcaagaccacggtggcgccgtactcg
ctgcgcgggcgcgacgagccgacggtctcggctccggtcacgtgggacgaggtccgcgct
tgccggcacgtcacgcacctcaggttcaccgcgggcgaagtcctggcgcgcgtcgaggac
atcggagatctgttcgccgatctggaacgcacccgcgtcccgattttggcgttcggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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