KEGG   Amycolatopsis mediterranei S699: RAM_16560
Entry
RAM_16560         CDS       T01822                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amn  Amycolatopsis mediterranei S699
Pathway
amn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RAM_16560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amn03400]
    RAM_16560
Enzymes [BR:amn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RAM_16560
DNA repair and recombination proteins [BR:amn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RAM_16560
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AEK41800
UniProt: A0A9R0NWG2
Position
complement(3510725..3512737)
AA seq 670 aa
MAADDASLVPAWLEPMLAKADGGRLRTGPEWAYEYKLDGYRAAMRIAPDGTTVLTSRNNI
DFTAEFTDLEGVLAPALDGRAAYLDGEIVVYGEDGRIDFERMQERRGRYVRHQSGPKGRE
FTDVPVRFLAFDLLRLGDESLLAMPYDERRRLLAELPMPDPYRVSVVRAVTFDELAADRR
TPADFLAHAASAGYEGVVAKLRSSAYHPGQRPDSWLKHPLVRTQEVIVCGWRPGQNSFTG
TLGGLLLGAHDPATGDLVYIGDVGTGFSQATRADLRAQLEAMERRTHPFVTTPPREDTAR
ARWVEPRLVGEIVYRQFTRGGRVRHTAWRGLRHDKDPAEVLAPRAVPHEPAGAAPAPPSP
SSSASASASPSPEPAGQRITVQAGDRRLTLSNLDKVLYPADGFTKGEVINYYSRVAAVLL
PHLAGRPVTFIRYPNGVDGQKWFEKNAPKGAPDWLRTVRLAGTGGTIDYPLLDDLPGLVW
AANMAALELHVPQWTVEQGTRQPPDRLVFDLDPGPGTTIVDCCRVAERLHDVLVADGLTP
YAKTSGSKGMQLYCGIRTDDPAAPSAYAKRLAQRLAKETPESVTAVMAKAQRTGRVFIDW
SQNNPAKTTVAPYSLRGRDHPTASTPVTWDEVRACRHVNRLTFTADDVLDRLEDHGDLLA
GLIEDRAPLG
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggcggcagacgacgcgtcgctcgtcccggcctggctggagccgatgctcgccaaggcc
gacggcgggcggctgcgcaccggcccggagtgggcctacgagtacaaactggacggttac
cgggcggccatgcggatcgccccggacggcaccaccgtgctcaccagccgcaacaacatc
gacttcaccgcggagttcaccgacctcgagggcgtgctcgcccccgcactggacggccgc
gccgcctacctggacggcgagatcgtcgtctacggcgaggacggccggatcgacttcgag
cggatgcaggagcgccgcggccgctacgtccggcaccagagcgggccgaaggggcgggag
ttcaccgacgtcccggtccggttcctggccttcgacctgctccggctcggggacgagagc
ctgctggccatgccgtacgacgagcgccgccggctgctggccgagctgccgatgcccgat
ccgtaccgcgtttcggtggtccgcgcggtcaccttcgacgagctcgccgccgatcgccgc
acccccgcggacttcctcgcccacgccgcgtccgccgggtacgagggcgtcgtcgcgaaa
ctgcggtcgtcggcctaccaccccgggcagcggccggattcgtggctcaagcacccgctg
gtccggacgcaggaggtgatcgtctgcggctggcggcccgggcagaacagcttcaccggc
accctcggcgggctcctgctcggcgcgcacgaccccgcgaccggcgacctggtctacatc
ggcgacgtcggcaccggcttcagccaggccacccgcgccgacctgcgggcgcagctggag
gcgatggagcgccgcactcacccgttcgtgacgacgccgccgcgggaggacaccgcccgc
gcccgctgggtggagccgcggctggtcggcgagatcgtctaccgccagttcacccgcggt
ggccgcgtccgccacaccgcctggcggggcctgcgccacgacaaggacccggccgaggtc
ctggcgccgcgcgcggttccgcacgaacccgccggcgcggctccggcaccgccttcgccc
tcgtcgtcggcttcggcgtcggcgtcgccttcacccgagccggcggggcagcggatcacc
gtccaggccggcgatcggcggctcacactgtccaatctggacaaggtgctgtacccggcg
gacggcttcaccaagggcgaggtgatcaactactactcccgcgtcgcggcggtgctgctg
ccgcacctcgccgggcggccggtgacgttcatccgctacccgaacggcgtcgacggccag
aagtggttcgagaagaacgccccgaagggcgccccggactggctgcgcacggtgcgcctg
gccggcacgggcggcacgatcgactacccgctcctggacgacctcccgggcctggtgtgg
gcggcgaacatggcggcgctcgagctgcacgttccccagtggacggtggagcagggcacc
cggcagcccccggaccggctggtgttcgacctggacccgggcccgggcacgacgatcgtc
gactgctgccgggtggcggagcgcctgcacgacgtcctggtcgccgacgggctgacaccg
tacgcgaaaacgtcgggctccaagggaatgcagctctactgcggaatccgcacggacgac
ccggcggccccgtcggcgtacgccaagcggctcgcccagcgcctggcgaaggagacaccg
gagtcggtgacggcggtgatggcgaaggcccagcgcacgggccgggtgttcatcgactgg
agccagaacaacccggcgaagacgacggtggccccgtattcgttgcgcggccgcgaccac
ccgacggcgtcgaccccggtgacgtgggacgaggtgcgagcttgccgccacgtgaaccgc
ttgacgttcacggcggacgacgtcttggaccgcctcgaagaccacggcgatctgctggcg
ggactgatcgaggaccgcgcgccgctggggtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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