KEGG   Amycolatopsis mediterranei S699: RAM_26505
Entry
RAM_26505         CDS       T01822                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
amn  Amycolatopsis mediterranei S699
Pathway
amn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RAM_26505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amn03400]
    RAM_26505
Enzymes [BR:amn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RAM_26505
DNA repair and recombination proteins [BR:amn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RAM_26505
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: AEK43778
UniProt: A0A9R0P023
Position
complement(5774886..5775749)
AA seq 287 aa
MKTSHPDKVFYPEDGLTKGDVVEYYRAVADVMLPHLRGRPLTLRRFPDGIGKPGWFQKHP
GEHFPDSIRVERVPRRGGGTDEYVVCEDAATLEYLANQGTVEFHVWLSTADAPERPDRLV
LDLDPPDGTPVTELRTVARRIRDHYERVGLTAFVQATGGRGFHVLAPLDAKSETDVVLEL
SRALADRVAGDDPDRLTTAQRKDQRGDRIFLDANRNGYAQTFVAPYSLRARPGAAAATPL
DWRELGTADPAGWSLVKEKRRLARKEDPWRDLDEHAGSAEAALKQLG
NT seq 864 nt   +upstreamnt  +downstreamnt
gtgaagacttcccacccggacaaggtgttctaccccgaagacgggctcaccaagggcgac
gtcgtcgagtactaccgcgccgtcgcggacgtcatgctgccgcacctgcgcggccgtccg
ctgacgctgcggcgcttccccgacggtatcgggaagccgggctggttccagaagcacccg
ggggagcacttcccggactcgatccgggtcgagcgcgttccccggcgcggcggtggcacc
gacgagtacgtcgtgtgcgaagacgccgcgacgctggagtacctggcgaaccaggggacg
gtcgagttccacgtctggctgtccacagcagacgccccggagcggcccgaccggctggtg
ctcgacctcgacccgccggacggcacgccggtcaccgagttgcgcaccgtcgcgcggcgc
atccgcgaccactacgagcgggtcggcctgacggcgttcgtccaggcgaccggcggccgc
gggttccacgtcctcgcgccgctggacgcgaagtcggagaccgacgtggtgctggagctc
tcgcgcgccctcgccgaccgggtcgccggcgacgacccggatcggctgaccacggcccag
cgcaaggaccagcgcggcgaccggatcttcctggacgccaaccgcaacgggtacgcgcag
acgttcgtggcgccgtactcgctgcgcgcccgcccgggtgcggcggccgcgaccccgctg
gactggcgggagctgggcaccgcggacccggccggctggtccctggtcaaggagaagcgg
cggctggcccgcaaggaggatccttggcgggacctggacgagcacgcggggtcggccgag
gcggcgctgaagcagctcgggtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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