KEGG   Acaryochloris marina: AM1_3593
Entry
AM1_3593          CDS       T00617                                 
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase, gamma subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
amr  Acaryochloris marina
Pathway
amr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AM1_3593 (rpoC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amr03021]
    AM1_3593 (rpoC1)
   03400 DNA repair and recombination proteins [BR:amr03400]
    AM1_3593 (rpoC1)
Enzymes [BR:amr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AM1_3593 (rpoC1)
Transcription machinery [BR:amr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AM1_3593 (rpoC1)
DNA repair and recombination proteins [BR:amr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AM1_3593 (rpoC1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 Cas9-BH
Other DBs
NCBI-ProteinID: ABW28583
UniProt: B0C2D1
Position
3644614..3646485
AA seq 623 aa
MPKLEQRFDYVKIGLASPERIRQWGERTLPNNQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGI
PSYMATLLDMPLRDVEQIVYFNAYVVLDPGNADTLSYKQLLTEDQWIEIEDQIYSEDSQL
EGIEVGIGAEAVQRLLQDIKLETEAETLREDIGNAKGQKRAKLIKRLRVIDNFVGTGSQT
DWMVLSVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRN
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIGQGLVNNIKAAKRLIQRNDPVIWDVLEE
VIEGHPVMLNRAPTLHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLSI
EAQSEARLLMLASNNILSPATGRPIVTPSQDMVLGAYYLTADNPGRQNGAGKYFAGLDDA
IMAYEQQQVDLHAYVWVRFDGPVDDGEDDVEPEVETSADGVVTQTYPSRRIRKDADGTLI
SQYIRTTPGRIIYNKTIQDSLAS
NT seq 1872 nt   +upstreamnt  +downstreamnt
atgccaaagctcgaacaacgatttgactacgtcaaaattgggctagcctctccggaacgg
atccggcagtggggggagcgtaccttacccaataaccaagtggtcggtgaagtcaccaaa
ccagaaaccatcaactaccgaaccttaaaaccggagatggatggtctattttgtgagcgg
atctttggtcctgccaaggattgggaatgtcactgtggcaaatataagcgggttcggcac
cgaggtatcgtctgtgagcgctgtggcgtcgaggtgactgaatcgcgggtgcgacgacat
cgcatgggctacattaaattagccgctcccgtgacccacgtttggtacttgaaaggtatt
cctagctatatggctacgttgctggacatgcctctgcgggatgtagagcagattgtttat
ttcaatgcctatgtggttttggatccaggcaacgcagataccttgtcctataagcaactc
ctaacggaagatcagtggatagaaattgaggatcaaatctatagcgaggattctcagcta
gaagggattgaagtcggcattggtgctgaggctgtgcaaagactgctccaggacatcaag
cttgaaacagaagctgaaactctgagagaggacattggcaacgctaagggccagaaaaga
gccaagctgattaagcgattgcgggtcatcgataactttgtaggaacaggctctcaaacc
gattggatggttctgagcgtgatcccagtgattccaccagatttgagaccaatggtgcag
ttggatggtggacgatttgccacctctgacctcaatgatctgtaccgtcgagtgattaac
cgcaataatcgcctcgctcgattgcaagagattttagctccagagattatcgttcgaaat
gagaaacggatgttgcaagaggcggtggatgccttgatcgacaacggccgccgaggtcga
accgtggtgggagcgaataaccgtcccttaaaatccttgtctgatatcattgaaggaaag
caaggtcgtttccgtcagaaccttctgggtaaacgggttgactactccggtcgttctgtg
atcgtcgtgggtcccaagctaaaaatgcaccagtgcggcttacccaaagagatggcaatt
gaactctttcagccctttgtcattcaccgtttgattggccaaggtttagtgaataacatc
aaagcggctaagcgtctgattcagcgtaatgatcccgttatctgggatgtgttggaagaa
gtgattgaagggcatccagtgatgctcaaccgggcgccgaccttgcaccgattgggaatt
caagcgtttgaacccatcttggtggatggtcgagcgattcagctacatcccttggtttgc
ccggcctttaacgccgactttgacggagaccaaatggcggtgcatgtgcccctgtccatt
gaagctcagtctgaagcccgtcttctgatgttggcctcgaataatattctgtcgccagca
acagggcgtcccattgttacgcccagtcaggacatggtgttgggagcttactatctgact
gcagataatccaggccggcaaaatggggcaggcaagtattttgcgggtttagacgatgcc
attatggcttatgagcagcagcaagttgacttacatgcctatgtttgggtgcggtttgac
ggcccagtagatgatggcgaagacgacgttgagcctgaggtagaaacctctgcggatggc
gttgtcactcaaacttacccttctcgtcgaattcgcaaggatgcagacgggacattgatt
tcgcaatatattcgcacgacccctggtcgcattatttacaacaaaaccatccaggattca
ttggctagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (46)   

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