KEGG   Acaryochloris marina: AM1_3925
Entry
AM1_3925          CDS       T00617                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
amr  Acaryochloris marina
Brite
KEGG Orthology (KO) [BR:amr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amr03021]
    AM1_3925 (rpoD)
Transcription machinery [BR:amr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AM1_3925 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 HTH_10 DUF1525
Other DBs
NCBI-ProteinID: ABW28910
UniProt: B0C890
Position
complement(3976790..3977746)
AA seq 318 aa
MRTKEIAKDSVRSYLREIGRVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDA
EWSAAAKLSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGM
QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQ
KLGRAATISELATSLDLTTKQVREYLERARQPLSLDVRVGDNQDTELGELIEDPSESPEN
FTLQASLRGDLERLMADLTDQQQQVLHLRFGLDDGQPLTLAKIGDRLSISRERVRQIERE
ALSKLRKRKADISEYLAS
NT seq 957 nt   +upstreamnt  +downstreamnt
atgagaaccaaagaaattgccaaagattccgtgcgctcttacttgcgagagattgggcgt
gttcctctcttaacccatgaagaagaggtgacgtttggcaagcaggtccaacatctgatc
aagttgcaaacgattcgcgatgaattagcggagcaactagagcggcaaccgaacgatgca
gagtggtcggcggctgccaagctctcggaagccgaactacaaaaggctctacatgaaggg
gaagcggctaagcgaaagatggtggaagccaatctacgcttagtggtttctgtcgcaaag
aaatatatcaagcgcaatgtggacctgttggatctgatccaagagggtacgattggcatg
cagcggggcgttgagaagttcgacccaactaaaggatatcgcttctcgacctatgcctac
tggtggattcggcaggcgatcacccgcgcgatcgcagaaaaaggacgaacaattcgactc
ccgatccacatcacggaaaagctcaacaaaattaagaagacgcaacggcagctttctcaa
aagttgggccgagctgcaaccatcagcgaattagccacgtctttagacttaactacaaag
caagtccgagaatatttagagcgcgctcgccaacctttatccctggatgttcgggttggg
gataatcaggatactgaactgggtgaactaatcgaagatccgtctgaatctcctgagaat
tttaccctacaagcttctttgcggggagatttggagcggctaatggcagatttgacggac
cagcagcagcaggttctccacctccgctttggtttggatgatggtcaacccctaacctta
gctaagattggcgatcgtttaagcatcagccgggaaagggttcgacagattgagcgggaa
gctctgagtaagctacggaagcgcaaagctgatatttctgagtatctggctagctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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