KEGG   Actinoplanes missouriensis: AMIS_72160
Entry
AMIS_72160        CDS       T01795                                 
Symbol
rho
Name
(GenBank) putative transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ams  Actinoplanes missouriensis
Pathway
ams03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ams00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AMIS_72160 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ams03021]
    AMIS_72160 (rho)
   03019 Messenger RNA biogenesis [BR:ams03019]
    AMIS_72160 (rho)
Transcription machinery [BR:ams03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AMIS_72160 (rho)
Messenger RNA biogenesis [BR:ams03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AMIS_72160 (rho)
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 VWA_2 NACHT
Other DBs
NCBI-ProteinID: BAL92436
UniProt: I0HHE9
Position
complement(7822898..7825048)
AA seq 716 aa
MTSGVSDVADGAGTTATATKRRRGGTGLSAMLLPELQSLAASLGISGTARMRKGELIAAI
TERQSGGGAAAEPAPRPRTNGSEAVASAPAPAQAAPVETPKTAAAPADKAPAQSEQPAPA
ATERPSRRSRERASRDSAPRESARDAATREPAARDSANREPAARESGNRESGNRESVNRE
PAEAVPAAVAPVAASAPAEAPAASTAPAETTERGERGDRPERGDRPERGERNRDRQRNQR
DGQRDQRDGQRDGQRDGQRDGQRDQRDRNDARSDQGRSDSGRADQGHDDDDEGGEGGRRS
RRSRFRDRRRGRDRDDDGGGRQRDGGQREGREPHVAEDEVLVPVAGILDVLDNYAFVRTT
GYLSGPNDVYVSMSQVKKYGLRRGDAVTGAVRSTPRDTGEQRRDKYNPLVRLDTINGMEP
DEARRRPEFYKLTPLYPQERLRLETEPHILTTRVIDLVMPIGKGQRALIVSPPKAGKTMV
LQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVVAATFDRPPQDHTTVAELAI
ERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGRIMSGGIDSTALYPPKRFLGAARNI
ENGGSLTILATALVETGSMMDTVIFEEFKGTGNAELKLDRKIADKRTFPAVDVSASGTRK
EEILMGKEELAIIHKLRKVLSSLESGAALDLLLDRLKQTRTNIEFLMQIAKSTPGE
NT seq 2151 nt   +upstreamnt  +downstreamnt
gtgacgtcgggtgtttctgacgtcgctgacggcgccggcaccaccgcgaccgccacgaag
cgccgccgaggcggcaccgggctgtccgcgatgctgctgcccgagctgcagagcctcgcc
gcctccctcggcatctccggcactgcccggatgcgcaagggcgagttgatcgccgcgatc
accgagcgccagagcggtggcggcgcggccgccgagccggcgccgcgtccgcgcaccaac
ggctccgaggccgtcgcctcggcccccgccccggctcaggccgctccggtcgagacgccg
aaaaccgcagccgccccggccgacaaggccccggcacagtccgagcagccggccccggct
gccaccgagcgtccgtcgcggcgcagccgggagcgtgcctcccgggactcggctccgcgt
gagtcggcccgcgacgccgcgacccgtgagcctgccgctcgcgactccgcgaaccgtgag
cccgccgctcgcgagtccggaaaccgcgagtccggaaaccgcgagtccgtgaaccgggag
cccgccgaggccgtcccggccgccgttgctccggtcgccgcctccgcgccggccgaggcc
ccggccgcgtccactgctcccgccgagaccaccgagcgtggcgagcggggcgaccgcccg
gagcgtggcgaccgtcccgagcgtggcgagcgcaaccgggaccggcagcgcaaccagcgt
gacggccagcgcgatcagcgtgacggccagcgcgatgggcagcgtgacggccagcgcgat
gggcagcgtgaccagcgggatcgcaacgacgcgcggtccgaccagggccggtccgactcc
ggtcgtgccgaccaggggcacgacgatgacgacgagggcggcgagggcggccgccggagc
cggcgcagccgcttccgggaccgtcgccgtggccgcgaccgtgacgacgacggcggtggc
cgtcagcgtgacggtggccagcgcgagggccgggagccgcacgtcgccgaggacgaggtc
ctcgtcccggtggccggcatcctggacgtgctggacaactacgcgttcgtccggaccacc
ggttacctctccggcccgaacgacgtctacgtctcgatgtcccaggtgaagaagtacggc
ctgcgccgcggcgacgcggtgaccggcgcggtgcgctccaccccgcgggacaccggtgag
cagcgccgggacaagtacaacccgctggtccgcctggacaccatcaacgggatggagccg
gacgaggcccgccgccgtcccgagttctacaagctcaccccgctctacccgcaggagcgc
ctgcggctggagaccgagccgcacatcctcaccacccgcgtcatcgacctggtcatgccg
atcggcaagggccagcgggcgctgatcgtctccccgccgaaggccggtaagacgatggtg
ttgcaggcgatcgccaacgcgatcacccacaacaaccccgagtgccacctgatggtcgtg
ctcgtggacgagcggccggaagaggtcaccgacatgcagcggtcggtgaagggcgaggtc
gtcgcggccacgttcgaccgtccgccgcaggaccacaccacggtcgccgagctggcgatc
gagcgggccaagcgcctcgtcgagctgggtcacgacgtggtcgtgctgctcgactcggtg
acgcggctcggccggtcgtacaacctggcggcgccggcctccggccggatcatgtcgggt
ggtatcgactcgaccgcgctctacccgccgaagcggttcctcggcgcggcgcgcaacatc
gagaacggtggctcgctcaccatcctcgcgacggcgctcgtcgagaccggctcgatgatg
gacacggtgatcttcgaggagttcaagggcacgggtaacgccgagctcaagctcgatcgc
aagatcgcggacaagcggaccttcccggccgtggacgtctccgcctccggcacccgtaag
gaagagatcctgatgggcaaggaggagctggcgatcatccacaagctccgcaaggtgctc
agctcgctggagtccggcgcggctctggacctcctgctggaccggctcaagcagacccgg
accaacatcgagttcctgatgcagatcgccaagtcgacgcctggcgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (75)   

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