KEGG   Alkaliphilus metalliredigens: Amet_1006
Entry
Amet_1006         CDS       T00551                                 
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
amt  Alkaliphilus metalliredigens
Pathway
amt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Amet_1006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amt03019]
    Amet_1006
   03016 Transfer RNA biogenesis [BR:amt03016]
    Amet_1006
Enzymes [BR:amt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Amet_1006
Messenger RNA biogenesis [BR:amt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Amet_1006
Transfer RNA biogenesis [BR:amt03016]
 Prokaryotic type
  tRNA degradation factors
   Amet_1006
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 KH_1 PNPase S1_2 DUF1773 LCD1
Other DBs
NCBI-ProteinID: ABR47223
UniProt: A6TM05
Position
complement(1050883..1052991)
AA seq 702 aa
MIRTFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCD
YEEKLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQ
DCPPDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGKYIVNPTSEQKELSELELIVSGT
KDAVMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETDSEL
LAEVVSFLDTKLANAIKTVDKTERNENIKAISAEALDYFEEKYEGRSKEVNTILSKQIKV
ETRKMITSEGIRPDNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQ
RIDGLGEEDEKRYMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDFPY
AIRLVSEVLACNGSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKEEGQIAILSDIQG
MEDALGDMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAITS
PRTELSAYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVKINIENDGTIYIAAPDQE
SARVALEMIELIVKDPVVGEVYTGKVIKIMDFGAFVEILPGKEGLVHISNLAHERVAKVA
DVLAEGDLIEVKLMEINPQGKIGLSRKALLPKPEKEAPKKIE
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgataagaacttttgaaatggagcttggaggcagaccttttgttgttgaacttggtaaa
gtagctgagcttgcccagggatcttgtatgattaaatacggagatacctttgttttagtt
acggcttgtgcatctaaggagcctaaggaaggactagatttcttcccattgagctgtgat
tacgaagaaaaattatatgctgttggcaaaatacccggtggctttatcaaaagagaaagc
agacctagtgaaaaagcaacattaactgctaggttaattgatagacccattagacccctt
ttcccaaagggatatcataatgatgtccaagtgattgccactgttttatccgtagaccaa
gattgtccccctgatattagcgcaatgatcggttcttcaattgccctatctgtctctaat
attccatttatgggacctacggcttctgtttcagttggtatgattgacggtaagtatatt
gtaaaccccaccagcgaacaaaaagaacttagtgagctagagctcatcgtttctgggacc
aaggatgcagtgatgatgatcgaagccggggccaatgaattaacagaggctcaaatctta
gatgccattatgtttgcccatgaagaaatcaaaaaaatagttacttttatcgaacacatt
gtgtcagaggtaggaaaacctaaatctgaagtcattgttaaggaaacagactcggagctc
ttggccgaggttgtaagcttcttagacacaaaattagcaaatgccattaaaaccgttgat
aagacagagcgaaatgaaaatatcaaggctatttccgctgaagccctggactattttgag
gaaaaatacgaaggtcgttcaaaagaagttaatacgatcctgtcaaaacaaattaaagta
gaaacacgtaaaatgattacttccgagggtattcgcccggacaatcgtaaactagatgag
atcagacccatatctagcgaggtaggtatcttaccaagaacccatggtacaggcttattc
accaggggtgaaacacaggtattaacggttacgaccctaggggacttaagagacgcacaa
cggattgatggtctcggtgaagaagatgaaaagcgatatatgcatcattacaacttccct
ccctatagtgttggggagactcgattcatgaggggtccaagcagaagagaaattggtcat
ggtgccttagttgaaagagcgcttaaaccaatgattccatgcaaagaggattttccttat
gccattcgactggtttcagaagttcttgcgtgcaatggatcttcttcccaggcaagtgtt
tgtggtagcaccctttccttaatggatgccggtgtgccaattaaaggtatggtagcggga
atcgccatgggactgattaaagaggaaggccaaattgccatcctctctgacatccaaggg
atggaagacgccttaggagacatggacttaaaggtagcaggtactgaaaatggtattact
gccctgcaaatggatattaaaatagcaggaatcgatagaaacattatggaaacagccctg
gcccaggctaaaattggaagaacccatattttaaataagatgaaggaagccattaccagc
cctagaactgaattatctgcctatgcccctcaggtaactaagttaaaagttcatcctgac
aaagtcagagaagtaatcggtgccggtggcaaggtcattaataagattattgatgagact
ggtgttaagattaatattgaaaatgatgggacaatctatatcgcggcaccggatcaagaa
tctgctagagtggcattagaaatgatcgaactcatcgttaaagaccctgttgtaggcgaa
gtgtacacaggaaaagtaatcaaaatcatggattttggtgccttcgtagaaatattaccg
ggcaaagaaggattagttcacatctctaatcttgcccatgaaagagtggctaaggtagct
gatgtccttgctgagggtgacctaattgaagttaaattaatggaaattaatccccaagga
aaaataggcctatctcgaaaagcgctattgccaaagccagaaaaagaagcaccaaaaaaa
attgaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (37)   

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