KEGG   Alkaliphilus metalliredigens: Amet_2678
Entry
Amet_2678         CDS       T00551                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
amt  Alkaliphilus metalliredigens
Pathway
amt03030  DNA replication
amt03430  Mismatch repair
amt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:amt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Amet_2678
   03430 Mismatch repair
    Amet_2678
   03440 Homologous recombination
    Amet_2678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amt03032]
    Amet_2678
   03400 DNA repair and recombination proteins [BR:amt03400]
    Amet_2678
Enzymes [BR:amt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Amet_2678
DNA replication proteins [BR:amt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Amet_2678
DNA repair and recombination proteins [BR:amt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Amet_2678
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII HHH_6 tRNA_anti-codon RNase_H_2 Rv2179c-like DNA_pol3_a_NI HHH_3 DEDDh_C BamHI DUF4251 Polo_box_3 SSB
Other DBs
NCBI-ProteinID: ABR48830
UniProt: A6TRL2
Position
complement(2694274..2698572)
AA seq 1432 aa
MYATKEMSLHDFLTRLNINCDKLNGDFQVQDLKFYKKSRKLILGLKSHEIINSEELDHIL
REVEEALKIPNPIKIEYKYTGNPQTAQEFIAQDWNNIIYFLKNMIPSIKGTLNETSYILK
DGDLRITVSDSFTLKKAKERNVHIQIEDHLKNWFGLNIKCVLELDEKSAFHVDDYESQKE
KESMQFVQEINKASQNSEMVTSNKGKRVTVVDDDSILIGRKFSGEIIKLTDLKNELGTVI
VEGEVFNLECRELKGGKKLLSLQITDYSNSITVKIFERKKQVKDLEELFHKGQYIRVKGD
MTFDKFMRENVLMASDVVNMPQEKGRWDNAPEKRIEFHMHTKMSSMDGVSSTSELVKRAA
DWGHEAIAITDHGVVQAFPEAMDAGKKHGIKVIYGMEGYLINDEAKIIPNATLYSLDDEY
IVFDIETTGLSNRNDRITEIGAVKIKDSQVIDKFSALVNPEMKIPSKIVELTGITDDMVV
DKQTIDVILPGFLAFIGSSPVVAHNSDFDMGFIRENANRIERTIENQVIDTLKLSRILLP
QLKRHRLNSIAKELNVSLENHHRAVDDAQATAEIFVKFIELLKQKEVYTLEEVNTKLVKD
VDYKKLDTYHIMIYAKNQKGLKNLYQIISESHLEYFYKKPRVPKSILTKYREGLLIGTAC
EAGELYKSILGNKPESDIEKTASYYDYLEIQPISNNQFLLEKGMVNTTEELQNINKKIVA
LGNKINLPVIATGDVHFLDPNDEVFRKILMAGQGFTDADNQAPLYLKTTDEMLDEFRYLG
SKTAKDVVVNNPRKLNEEIEKLIPIPDGTFPPEIEGSDEELRRMCYEKAERIYGNPIPEI
VKTRLDKELNSIISNGYAVMYIIAQKLVTKSLRDGYLVGSRGSVGSSFAATMSDITEVNP
LAPHYVCPECRYSEFITDGSYGSGADLPDKKCPECHGQLIKDGHEIPFEVFLGFEGDKEP
DIDLNFAGEYQSEAHHYTEELFGKGKVYRAGTIGTIADKTAYGFVKKYLEERELYYTSAE
VNRLTMGCTGVKRTSGQHPGGVMIVPANLDVHEFSPIQYPANDSTSGVITMHFDYHSISG
RLLKLDILGHDVPTIIKMLEDLTGINAQEIPLDDEKTISLFTTTKNLGIDPKELGCEVGT
LGIPEFGTKFVRQMLLDTKPSTFGELVRISGLSHGTDVWLNNAQDLVRNNIAELKDVIST
RDDIMNYLMLKGLPPKSAFKIMENVRKGKGLKPEEEQLMKENNVPEWYIDSCKKIKYMFP
KAHAAAYVMMSFRIAYCKVHYPQAFYATYFTTKAEDFDAHLIGKGKAVVKSKIDELELMG
NDLTAKDKNFLTVLEVALELYCRNIELLSVDVYKSDPDKFTIIDGKLLPPLRALQGVGQN
AARNIAKVREAGEFLSKEDLRERAKVTKTVIEALTNHGCIADLPDTNQLSLF
NT seq 4299 nt   +upstreamnt  +downstreamnt
atgtacgctacaaaagaaatgagcttgcatgattttttaacgaggttgaacatcaattgt
gataaattaaatggtgattttcaagttcaggatttaaagttttataagaaaagtcgaaag
cttatcttaggacttaaatctcatgaaatcattaattcagaagaattagatcatatctta
agggaagtcgaagaagctttgaagatccccaaccccatcaaaattgaatataagtataca
ggcaatcctcaaactgcacaagaatttattgcacaagattggaataatattatatacttc
ttaaaaaacatgattccgtctataaaggggacattaaatgaaacttcgtatatcctaaag
gatggagatttacggattacagtttctgattcttttactttaaaaaaagcaaaggaacga
aatgtgcatattcaaatagaagatcacttaaaaaattggtttggacttaatatcaagtgt
gttttagagttagatgagaaatcagcctttcatgtggatgactatgagagtcaaaaagaa
aaagagagtatgcaatttgttcaggagatcaataaggcatctcaaaattcagaaatggtt
acaagtaataaaggtaagcgtgtgaccgtagtagatgatgacagtattctaattggtaga
aagttttctggagagatcattaaattgactgatttgaaaaatgaattaggcacagtaatt
gttgaaggagaagtttttaatcttgagtgtagagagctcaaggggggcaaaaaactgctg
agcttgcagataacggattatagtaattccattacagttaagatttttgaacgtaagaag
caagtcaaagatttagaggaattattccacaagggccaatacattagagttaagggagat
atgacctttgataaattcatgagggaaaatgtgttaatggcaagtgatgtggttaatatg
ccgcaagaaaagggacgttgggataatgcccctgaaaaacgaatcgaatttcacatgcat
acaaaaatgtcttcaatggacggagttagcagtacttcagaacttgtaaaaagagcagct
gactggggacatgaggctatcgcaattactgatcatggcgtggtgcaagcttttcctgaa
gccatggatgcaggaaaaaaacatggaatcaaagtgatctatggtatggaaggctatttg
attaatgatgaagcaaaaatcatccctaatgccactttatattcattagatgatgaatac
attgtctttgatattgaaacaacaggcctatcaaatcgaaacgataggatcacagaaatt
ggtgctgttaaaattaaggatagtcaggtcattgacaaattctcagccttggtaaaccca
gaaatgaaaataccatctaaaatagttgaactcactggaattacagatgatatggtggtt
gataagcaaacaattgatgtcattctacctggctttcttgcatttatagggagtagccct
gtggtggcgcataattccgattttgatatgggatttattagagaaaatgcaaatcgtatt
gaaagaaccattgagaatcaagtgatagatacgttgaagctatcacggattttgctacca
cagttgaaaagacatagacttaatagtatagcaaaggagttgaatgtatccttagaaaat
catcatagggctgtagatgatgcacaggctacggctgaaatatttgtcaaatttattgaa
ctgctaaagcaaaaagaggtttacaccttagaagaggttaatacaaaactagtcaaggat
gtagattataaaaaattagatacatatcatattatgatatacgcaaaaaatcaaaaggga
ttaaaaaatctttaccagattatttccgagtcacatttagagtacttctacaagaaaccc
agggtacctaaaagtatattaacaaagtacagagaaggattgctaatcggaacagcctgt
gaagcgggagagctctataagtcaatccttggcaataaaccagaatctgatattgaaaaa
actgcaagctactatgattacttagaaattcagcctatttctaacaatcaatttttgttg
gaaaaaggaatggtaaacaccacagaagagctacaaaatatcaataaaaaaattgttgca
ttaggaaacaagatcaaccttcctgttattgcaaccggagatgtacatttcttagaccca
aatgatgaagtctttaggaaaatactcatggctggtcaaggatttactgatgctgataat
caggcgcctttgtatcttaaaacaacggatgaaatgctagacgaatttcgttatttaggc
tcaaagacagccaaagatgtagttgtgaataaccctaggaaactaaatgaagagattgaa
aaattaataccaatccctgatggtacttttccgccggagattgaaggctcagacgaagaa
ttgagaagaatgtgttatgaaaaagcagagcgaatatacggaaatcctatacctgaaatc
gttaaaacaagattagataaggagttaaattcaattattagtaacggttatgcagtgatg
tatattatcgcacaaaaacttgtgactaaatccttaagggatggctatttagtcggttca
aggggatcggtaggatcctcctttgcagcgaccatgagtgatattacagaagttaatcct
ttagctccccattatgtttgtccagaatgccggtactctgaatttattacagatggttcc
tatggctctggtgctgacttaccagataaaaagtgtcctgagtgccacggtcaattaatt
aaagatggacatgaaataccgtttgaagtctttcttggatttgaaggagataaagagcct
gatattgacttaaactttgctggagaataccaaagtgaagcccatcattatacggaggaa
ttatttggtaaaggcaaggtttatcgagcgggaacaataggtaccatagcggacaaaact
gcctatgggtttgtcaagaaatatttagaggagagagagctgtattataccagtgcagaa
gtaaatcgtttaaccatgggatgtaccggtgtgaagcgaacttctggacaacatccagga
ggggttatgattgtacctgcaaatttggatgtccatgagttttctcccattcaatatcct
gcaaatgactcaacttcaggtgtcattacaatgcattttgattatcattcaattagtggt
agacttctaaaattggatatcctagggcatgatgtaccaactatcattaaaatgcttgag
gatcttacaggcattaatgcacaggaaatcccccttgatgatgagaaaacaattagctta
tttacgacgacaaaaaacttgggaattgatccgaaggaacttggctgtgaggttggcacc
ttagggatccctgaatttggaaccaaattcgttcgtcaaatgctattggatacaaaaccc
agtacttttggtgaattagttagaattagtggattgtcccatggtaccgatgtgtggctg
aataatgcacaggacttggttcgaaataatattgcagaattaaaagatgtgatttctacc
cgagatgatattatgaattatctaatgcttaagggacttccccctaaaagtgcatttaaa
ataatggaaaatgtccggaaaggaaaaggacttaaaccagaagaagagcaactcatgaaa
gaaaataatgtgccagagtggtatattgattcttgtaaaaaaataaaatacatgtttcca
aaggcacatgctgctgcctacgtgatgatgtcatttaggattgcttattgcaaagttcat
tatccccaggcattctatgctacctatttcacaacaaaggcggaggattttgatgcacat
ctcatcggtaaagggaaggcagtggtaaaaagtaaaatcgatgaacttgaactgatgggg
aacgacctaactgccaaagataagaactttttaacggttttagaggtagcccttgagcta
tattgtcgtaatatagaattgttatcggttgatgtgtacaaatctgatcctgataagttt
acgattatagatggtaaactccttcctcctttaagagctttacagggtgtcggtcaaaat
gcagctaggaatattgctaaggttagagaagctggcgaatttttatctaaggaagatttg
agagagagagctaaggtgacaaaaactgtaattgaggcattaacaaatcatggatgcatt
gcagacctccctgatacaaaccaactttccctcttttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (71)   

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