KEGG   Alkaliphilus metalliredigens: Amet_4126
Entry
Amet_4126         CDS       T00551                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
amt  Alkaliphilus metalliredigens
Pathway
amt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:amt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Amet_4126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amt03400]
    Amet_4126
DNA repair and recombination proteins [BR:amt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Amet_4126
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Amet_4126
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_21 RsgA_GTPase AAA_29 AAA_16 AAA_22 nSTAND1 nSTAND3 DnaJ_CXXCXGXG NACHT AAA_18 ATPase Viral_helicase1 cobW BCA_ABC_TP_C ExoX-like_C Med30
Other DBs
NCBI-ProteinID: ABR50207
UniProt: A6TVI9
Position
complement(4221777..4224614)
AA seq 945 aa
MARDKIIIRGAKEHNLKNIDIEIPREKFVVMTGLSGSGKSSLAFDTIYAEGQRRYIESLS
SYARQFLGQMEKPDVEYIEGLSPAISIDQKTTSKNPRSTVGTVTEIYDYLRLLFARVGTP
HCPVCHVEISQMTVQQIVDKVMELEERTKIQILAPIVRGKKGTHQKTLEQIKKDGFVRVR
INGEVREIYEEIELEKNKKHSIEVVVDRILVKPESQQRIADSVETVLKLSEGLVIIDVID
QEELLFSTKFACPEHGIGVEDLSPRMFSFNSPFGACTECNGIGHMKEVDPDLVIPNKKLT
LRQGAIAPWWTSGGTNDNTYYFKMIENLAEQYGTNVDTPVDELPQEMVQDILYGSSKKVY
FEYDSKYGGVRNYSGIFEGVLTNLTRRYKETNSEYMREKIEEYMAEHSCKSCKGARLKDE
VLAVTLGDKNINDVTQLAIKECKAFFDQLQLDERKTFIGKQVLKEIQSRLNFLIDVGLDY
LSLSRSSGTLSGGESQRIRLATQIGASLVGVLYILDEPSIGLHQRDNNRLLKTLRNLTDI
GNTVIVVEHDEDTMFAADHVIDIGPGAGIHGGEVVAQGDINDIIKEPRSITGQYLSGKKF
IEVPRERRTPNGKWVTVKGAKENNLKNINAKFPLGLFTCVTGVSGSGKSTLVNEILYKSV
AQELNRAKDKPGAHKSIEGLEYIDKVIEIDQGPIGRTPRSNPATYTGVFDDIRDVFAQTP
QSKMRGYLKGRFSFNLKGGRCEACKGDGIIKIEMHFLPDVYVPCEICKGKRYNRETLEVK
YKGKTISEVLGMNVEEAVGFFENIPKIHKKLQTLYDVGLSYIKLGQPSTQLSGGEAQRIK
LSSELSKRSTGKTLYILDEPTTGLHIADIHRLIGVLQRLAEGGNTILVIEHNLDVIKTAD
HIIDLGPEGGKGGGEIIAQGTPEEISENAKSYTGHYLKKALSSNH
NT seq 2838 nt   +upstreamnt  +downstreamnt
gtggcaagagataaaattattataagaggtgcaaaggaacataatctaaaaaatattgat
atagaaattccaagggaaaagtttgtggtcatgacaggtttatcgggttcaggaaagtca
tccttagccttcgataccatttatgcagaaggacagagaagatatattgaaagtctatcc
tcctatgctagacaatttttaggacagatggaaaagcccgatgtcgagtatattgaggga
ctttctccagcgatttcaatcgaccaaaagacaacaagtaaaaaccctagatcaactgta
ggaaccgtaacagagatctacgactatttacgacttctatttgcaagagttggaacgccc
cattgtccagtttgccatgttgagattagtcagatgacagtgcagcaaattgttgacaag
gtaatggaattagaggaaagaacaaaaattcagattcttgctcctatcgtaagagggaaa
aaagggacccatcagaaaaccctagagcaaattaaaaaagatggattcgtgagagttcga
attaatggtgaagtacgagaaatttatgaagagattgaattagaaaaaaataagaaacac
agtattgaggttgtggtagatagaattttagtgaaacctgaatcccagcaacgtattgca
gattctgttgaaactgtactgaaactcagtgaggggctggtaattatcgacgtgattgat
caagaggagttactcttctccactaaatttgcttgtccagagcacggtattggagtggag
gatttatcaccaaggatgttttcctttaatagtccctttggcgcctgcacagagtgtaat
ggaattgggcatatgaaggaagttgatcctgacttggtgattcccaataaaaaattgacc
ctccgccaaggggccattgcaccatggtggacatccggtggaacaaacgacaacacatat
tatttcaaaatgattgaaaacctagctgaacaatacggaaccaatgtggatactccagta
gatgaactaccacaagaaatggtacaggatatattgtatggctctagcaaaaaggtatac
ttcgaatatgattctaagtatggaggcgtgagaaattattctggaatatttgaaggagtt
ctcacgaatctaaccagacgatacaaagaaacaaactctgagtatatgcgtgaaaaaata
gaagaatatatggcagagcactcctgtaaaagctgtaaaggagccaggttaaaggacgag
gttcttgcggtaaccctaggcgacaaaaatattaatgatgtcacacaactggccataaag
gaatgcaaggcattctttgatcagcttcaactagatgaacgaaagacatttataggcaag
caagtattgaaagaaattcaaagtaggttaaactttttaattgatgtgggactagactac
ttgagtttgtcaagaagttcgggaacattgtcaggaggagaatctcagcgtattcgcttg
gccactcaaataggcgcaagtctagtgggtgtactatacattttagatgagcctagtatt
ggattacaccaaagagataataatcgtttgttgaaaacattgaggaatttaactgatatt
gggaatacagttattgtggtggaacatgatgaagataccatgtttgccgcagatcatgta
attgatattggtccaggagcagggatccatggtggtgaagtagttgcgcagggtgacatt
aatgacatcataaaggagccacgatccattacaggacaatatttaagtgggaaaaagttt
attgaagtgcctagggaacgcagaacaccaaatggcaagtgggttaccgtaaaaggcgcc
aaggaaaataatctaaaaaacattaatgccaagtttccattaggtctatttacttgtgtg
acaggggtatcaggatcgggaaaaagtaccctggtaaatgaaattctttataagagcgta
gcacaggagttaaatcgagctaaggacaaaccaggagcccataagagtattgaggggcta
gaatatattgataaagtaattgaaattgatcaaggtccaattggaagaacaccaagatca
aatccagctacctatacaggtgtctttgatgacatcagagatgtatttgcccaaacacct
caatcaaaaatgagggggtatctaaaggggagatttagctttaacttgaagggtggccgt
tgtgaggcttgtaaaggggatggaatcattaagattgagatgcattttctacctgacgtg
tatgtgccctgtgagatctgtaaagggaagcggtacaatcgtgagactttagaagttaag
tataaaggtaagacaatttcagaggttctgggtatgaatgtagaggaagcagtaggattt
tttgaaaacatacccaaaattcataagaagttacaaaccctatatgatgtaggattaagc
tatattaagttaggccaaccttcaacccagctttcgggtggagaagcacaacggattaaa
ttatcttcggaattaagcaaacgaagcacaggaaagactttatatatcctagatgagccc
acaacaggtttgcatattgccgacattcaccgattgattggtgtgcttcaacgactagcg
gaaggcggtaacaccattttagtcattgagcataacttagatgtcatcaaaaccgctgac
cacattatagacttaggacctgaagggggtaaaggtggtggcgaaatcatcgcccaagga
accccagaggaaatcagcgaaaatgcgaaatcctatacaggccattatttaaagaaggcc
ttatcatctaaccattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (54)   

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