KEGG   Pelagerythrobacter marensis: AM2010_960
Entry
AM2010_960        CDS       T03951                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
amx  Pelagerythrobacter marensis
Pathway
amx02024  Quorum sensing
amx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AM2010_960
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AM2010_960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amx03019]
    AM2010_960
   03036 Chromosome and associated proteins [BR:amx03036]
    AM2010_960
Messenger RNA biogenesis [BR:amx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AM2010_960
Chromosome and associated proteins [BR:amx03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AM2010_960
SSDB
Motif
Pfam: Hfq DUF5761
Other DBs
NCBI-ProteinID: AKM07037
UniProt: A0A0G3X7B6
Position
complement(1001007..1001546)
AA seq 179 aa
MPSGQTLSARPKAKPAEEPKQGRQPNLQDAFLNILRKNKTPVTMFLVKGVKLQGIVTWFD
NFSILLRRDGQSQLVYKHAISTIMPGQPMDAKQFASQDSNKKLRLLQDVFLSRVRDAEAQ
VTMFLVNGVMLQGAIAAYDLFCMLLEREGYVQLAYKHAVSTIQPATPVDLSDEWEGDED
NT seq 540 nt   +upstreamnt  +downstreamnt
atgcctagcggacagactctctccgcgcgccccaaggcgaagccggccgaagagcccaag
cagggacgccagcccaatctgcaggacgcgtttctcaacatcctgcgcaagaacaagacc
ccggttacgatgttccttgtgaaaggcgtcaagctccagggcattgtcacctggttcgac
aatttttccatcctgcttcgacgggacgggcaatcgcaacttgtctacaagcatgcgata
tcgaccatcatgcccgggcagccgatggatgcgaagcagttcgccagccaggattcgaac
aagaaactgcgcctgctgcaggatgtcttcctttcgcgcgtgcgcgacgccgaagcgcag
gtgacgatgtttctcgtcaatggcgtgatgcttcagggcgcgatcgcagcgtacgatctg
ttttgcatgctgcttgagcgagaaggctacgtccaactcgcctacaaacatgccgtatcg
acaatccagcctgcgactccggtagatctgtcggacgagtgggaaggcgacgaagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system