KEGG   Amycolatopsis sp. AA4: CU254_24635
Entry
CU254_24635       CDS       T05278                                 
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K01928  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
Organism
amyc  Amycolatopsis sp. AA4
Pathway
amyc00300  Lysine biosynthesis
amyc00550  Peptidoglycan biosynthesis
amyc01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:amyc00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    CU254_24635
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    CU254_24635
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:amyc01011]
    CU254_24635
Enzymes [BR:amyc01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     CU254_24635
Peptidoglycan biosynthesis and degradation proteins [BR:amyc01011]
 Precursor biosynthesis
  Amino acid ligase
   CU254_24635
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C Mur_ligase
Other DBs
NCBI-ProteinID: ATY16585
UniProt: A0A2K8MF94
Position
complement(5315548..5317107)
AA seq 519 aa
MPDSPAKAAAAPPRPARIDPVPLATLLARAGARLIADRPEAADLTVTGTTLRAQHVLPGD
LFAGLPGARAHGADFSDQALAAGAAAVLTDPSGADRPALRDAPVPVLVHPDPRAALGEIA
AWIYGEPSLHLSVLGVTGTSGKTTTSYLVDSGLRAAGRTTGLIGTVETRIAGERLASGFT
TPEAPDLQALLAVMLERGVTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDM
EEYFAAKSLLFDGRSTTEVVVVDSAWGQALLTPQTVTVSIEAGADALWRAADIEATPAGE
QTFTLLGPDGLSRAAKIPLPGTFNVANAVLAAAILASAGIDADDIVAGLAAVEVPGRMER
VYLGQEFTAVVDYAHKPAAVAQGLDALRARTEGRIITVLGCGGDRDTAKRPMMGEAAVRR
SDLLIVTDDNPRSEDPAAIRAAMLAGARAVGPAAGGEVLEIADRREAIAHAVSLAGPGDI
VLIAGKGHETGQEAQGVVHPFSDRDELEAAIRKRLEVTA
NT seq 1560 nt   +upstreamnt  +downstreamnt
ctgccggacagcccggccaaggcggccgccgcgccgccccgcccggcccggatcgacccg
gtgccgctggccactctgctcgcccgtgcgggagcccggctcatcgccgaccgtcccgag
gccgccgacctcaccgtcaccggcaccacgctgcgtgcgcagcacgtgctccccggtgac
ctgttcgccggcctccccggagcccgcgcgcacggcgccgacttcagcgaccaggccctc
gccgccggagccgcggccgtcctgaccgacccgagcggagccgaccggcccgcgctgcgc
gacgcgccggtgcccgtcctcgtgcacccggacccgcgcgccgcgctcggcgagatcgcc
gcgtggatctacggcgagccgtcgctgcacctgtccgtcctcggcgtcaccggcacctcc
ggcaagaccaccacctcctatctggtcgactcgggactgcgcgccgccgggcgcaccacc
ggcctgatcggcacggtcgagacccggatcgccggcgagcgcctggccagcgggttcacc
acgccggaggccccggacctgcaggcgctgctcgcggtgatgctggagcgcggcgtcacg
cacgtgccgatggaggtgtccagccacgcgctggcgctcggccgggtcaacggcacccgg
ttcgcggtcggcgcgttcacgaacctctcgcaggaccacctcgatttccacaaggacatg
gaggagtacttcgccgccaagtccctgctgttcgacggccggtcgaccaccgaggtcgtc
gtcgtggacagcgcgtggggacaggcgctgctcaccccgcagacggtgaccgtgtcgatc
gaagccggcgccgacgccctgtggcgcgccgccgacatcgaggcgaccccggcgggggag
cagaccttcacgctgctcgggccggacggcctcagccgcgcggcgaagatcccgctgccc
ggcacgttcaacgtcgccaacgcggtgctcgccgcggcgatcctggccagcgctggcatc
gacgcggacgacatcgtcgccgggctcgccgcggtggaggtgcccggccggatggagcgg
gtctacctcggccaggagttcaccgcggtggtcgactacgcgcacaaaccggccgcggtg
gcccagggcctcgacgccctgcgcgcccgcaccgaaggccggatcatcaccgtgctcggc
tgcggcggcgaccgcgacaccgcgaagcgcccgatgatgggcgaggcggcggtgcgccgc
agcgatctcctgatcgtcaccgacgacaacccgcgttcggaggacccggccgcgatccgc
gccgcgatgctcgccggggcccgcgccgtcgggcccgcggcgggcggcgaggtgctggag
atcgccgaccggcgcgaggcgatcgcgcacgcggtgtcgctcgccgggccgggcgacatc
gtcctgatcgcaggcaagggccacgagaccggccaggaggcccagggtgtggtgcacccg
ttctccgaccgggacgagctggaggccgccatccgcaagcgtctcgaggtgaccgcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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