KEGG T02804: B737

Amycolatopsis mediterranei RB: B737_7675

Entry

B737_7675         CDS       T02804

Symbol

rho

Name

(GenBank) transcription termination factor Rho

K03628

transcription termination factor Rho

Organism

amz Amycolatopsis mediterranei RB

Pathway

amz03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:amz00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B737_7675 (rho)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amz03021]
    B737_7675 (rho)
   03019 Messenger RNA biogenesis [BR:amz03019]
    B737_7675 (rho)
Transcription machinery [BR:amz03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     B737_7675 (rho)
Messenger RNA biogenesis [BR:amz03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     B737_7675 (rho)

SSDB

Motif

Pfam:

ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 NACHT FANC_SAP

Other DBs

NCBI-ProteinID:

AGT88336

Position

complement(8577167..8579170)

AA seq 667 aa
MSNTDLLSDVGSDTAGSNGTAPAPKRAVGGLTGKTVAELRSLAGELGVGETTGMRKGDLI
AAIRERQGKSRKPRAAAETLPLDGVGEPPKAAPKAKAEAPAAPAETKPEPKAEAPASAPS
DAPPQAERPQQDRQDTPQGQDGQSEEGGRSRRRRGSNRAAGSPDTQQGGDRQQGQGDRQQ
GGDRQQGQGDRQQGQGGDRQQGDRNRDQQRQGGGNRGDNRNDNRQDGNRQRNNQQDGNRG
GQDNRNQQPDDDEEGGRRGRRFRDRRRRGSGGGQREGGSPDTEIRDDDVLLPVAGILDVL
DNYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDAITGVVRQPRDGEQQRQKFNPLVRVD
SINGLEPDEAKRRPDFTKLTPLYPNERLRLETESHKLTTRVIDLIMPVGKGQRALIVSPP
KAGKTTIMQDIANAISTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPADHT
SVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRF
LGAARNIENGGSLTIFATAMVETGSTMDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDV
NPSGTRKDELLLNPDELAVTVKLSRVLHALDSQQAIDLLISRLRKTKTNVEFLMQVSKTA
LGGGEDD

NT seq 2004 nt +upstreamnt +downstreamnt
gtgagcaacaccgatcttttgagcgacgtgggtagcgacacggccggttcgaacggcacg
gcccccgctcccaagcgggcggtcggcgggctgaccggaaagaccgtcgccgaactgcgt
tcgctggctggggagctcggcgtcggcgagacgacgggcatgcgcaagggcgatctgatc
gccgcgatccgtgagcgccagggcaagtcccgcaagccgcgtgcggcggccgagacgttg
ccgctggacggcgtcggcgagccgccgaaggcggccccgaaggcgaaggccgaggcgccc
gccgctccggcggagaccaagccggagccgaaggccgaggcgcccgcctccgcgccgtcg
gacgccccgccgcaggccgagcgcccgcagcaggaccggcaggacaccccgcagggccag
gacggccagtccgaggagggcggccgcagccggcgtcgccgcgggtccaaccgggccgcc
ggatcgcccgacacccagcagggcggcgaccgtcagcagggccagggcgaccgtcaacag
ggcggcgaccgccagcagggtcagggtgaccgtcagcagggtcagggcggcgaccgccag
cagggcgaccgcaaccgcgaccagcagcgccagggcggtggcaaccgcggcgacaaccgg
aacgacaaccgccaggacggcaaccgtcagcgcaacaaccagcaggacggcaaccgcggc
gggcaggacaaccgcaaccagcagccggacgacgacgaggaaggcggccgtcgcggccgt
cgcttccgcgaccgtcgtcgccggggcagcggtggcggccagcgcgagggcggttcgccg
gacaccgagatccgcgacgacgacgtcctgctgcccgtggcgggcatcctggacgtgctc
gacaactacgcgttcgtgcggacctccggctacctcgccggcccgaacgacgtgtacgtc
tcgctgtcgctggtccgcaagtacggcctgcgccgcggtgacgccatcaccggtgtcgtg
cgccagccgcgtgacggcgagcagcagcggcagaagttcaacccgctggtgcgcgtcgac
tcgatcaacggcctggagcccgacgaggccaagcgccgtccggacttcaccaagctgacc
ccgctgtacccgaacgagcggctgcgcctcgagaccgagtcgcacaagctcaccacccgc
gtgatcgacctgatcatgccggtcggcaaggggcagcgcgccctgatcgtctcgccgccg
aaggccggcaagaccacgatcatgcaggacatcgcgaacgcgatctccacgaacaacccc
gagtgccacctgatggtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcag
cgctcggtgaagggcgaggtcatcgcctcgaccttcgaccggccgccggccgaccacacc
tcggtcgcggagctgtccatcgagcgggccaagcgcctggtcgagatgggccacgacgtc
gtcgtgctgctcgactcgatcacccgactgggccgggcctacaacctggcggctccggcg
tccggccggatcctgtccggtggtgtcgactcgaccgcgctctacccgccgaagcggttc
ctcggcgcggcgcgcaacatcgagaacggcggctcgctgaccatcttcgccacggcgatg
gtggaaaccggctcgacgatggacacggtcatcttcgaggagttcaagggcaccggtaac
gcggagctcaagctcgaccggaagatcgccgagcgccgggtgttcccggccgtcgacgtc
aacccgtccggtacccgcaaggacgagctgctgctgaacccggacgagctggccgtgacc
gtgaagctgagccgggtgctgcacgcgctcgactcgcagcaggccatcgacctgctgatc
tcgcggctgcgcaagaccaagaccaacgtcgagttcctcatgcaggtctcgaagaccgcc
ctcggtggcggcgaagacgactga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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