KEGG   Amphiprion ocellaris (clown anemonefish): 111587654
Entry
111587654         CDS       T06018                                 
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
aoce  Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aoce00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111587654 (parn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aoce03019]
    111587654 (parn)
Enzymes [BR:aoce01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     111587654 (parn)
Messenger RNA biogenesis [BR:aoce03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     111587654 (parn)
SSDB
Motif
Pfam: CAF1 RNA_bind R3H
Other DBs
NCBI-GeneID: 111587654
NCBI-ProteinID: XP_023153469
Ensembl: ENSAOCG00000003465
Position
Unknown
AA seq 686 aa
MEVTRKNYKDSLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQTKSKYITKPFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQQANGVGTPSFISPSSSKGPAHVPEEHKD
FINRVVEKVEALFSNSEKTLDLDPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERYIQ
VSKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKQLKENPFKSPQV
ETTERFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWVDDTS
AFVSLSQTDQVQIAMNTSRYAESYKIQTYAEYIQGKEKEKPGQTAKTWGEDGWVKSNYTS
STTSGFGYPRMRKRSISPVQGAQGTEEALIADGWSHYSYPDSTGSKKMKTDVPSGQANAD
AVESKTSEGWLRTTDASNSAELSPAHDDDDEDDKSSGDTDPCSDAEGTITWQQTSTVHRR
KSQKNKKKKSEAAESTTSLFDVPDLW
NT seq 2061 nt   +upstreamnt  +downstreamnt
atggaggtaacacgcaaaaattataaggacagtttaagcacggtgtacagcgccatagaa
gaggctgacttccttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactgaccaacgggctggacacaccggaggaacgatacacaaagctgaaaaagcat
tccatggactttctgctgttccagtttgggctctgtacattcaagtatgaccagacaaag
tcaaagtatatcacaaagccctttaacttttatattttcccaaaaccgttcaacaggacg
tcccctgacataaagttcatttgtcaaagttccagtattgacttcttggccagtcagggt
tttgacttcaacaaggtgttctgtcacggaatcccatacctaaatcaggaggaggaagcc
cagctgagagagcagactgaggagaggaggaatcaacaagctaatggtgtagggacacca
tcctttatctccccatcgtcctccaaaggccctgcacacgtacctgaggaacataaagat
tttatcaacagggtggtagagaaggttgaggccctcttcagtaactcagaaaagactttg
gacttggatccatgtactgggtttcagaggaagctgatctaccagacactgaactggaag
ttcccaaagggtcttcatgtggaaacagtggaaacagaaaagaaggagcgatacatccag
gtcagtaaagttgatgaagaggagaggaagaggagggaacagcagaaactggagagagag
caggaggaactaaatgatgctgttggtttctccagggtcatccacgccatctctaaatct
gggaaacttgtcgttggccacaacatgctcttggatgtgatgcacaccatccaccagttc
tactgccctctgccagaggatcttcaagactttaaagaggttacaatgtgtgtcttccca
agacttctggacacaaagttgatggcgtccactcagccatttaaggagttgatcactaac
acttctctggcagagttggaaaaacagctgaaggaaaacccctttaagtcgccacaagtc
gaaacgacagagaggttccccagttatgacacagcccaggagcagctccacgaggcaggg
tatgatgcctacatcactggcctgtgtttcatctccatggccaactacctgggttctttc
ttgactccacccaaagcttacatctcagcccgctccaaactaattgagcctttctttaac
aagctcttcctgatgaggattatagatataccctacctcaacatcacaggaccagatttg
caacccaagagagaccatgtcctgtatgtcaccttcccaaaagaatggaagactagtgac
ctctaccagctctttagtgcctttggaaacatccaggtttcatgggtagatgacacatca
gcatttgtgtcgctgagtcagacagaccaggtacaaatagctatgaacaccagccgctat
gcagagagctacaagatccagacatatgcagagtacatccagggtaaagagaaggagaag
cctggccaaacagccaaaacctggggcgaagatggctgggtgaaatctaactatacctcc
tccactacttctgggtttggataccccaggatgaggaaacgcagcatcagtcccgttcag
ggagcgcagggaaccgaagaggctctaattgcagatggctggagtcactactcataccca
gatagcactggcagcaagaagatgaaaactgatgttccaagtggacaggcaaatgcagac
gctgttgagagcaagacctcagagggatggcttaggacaacagatgcatccaattcagct
gagttaagtccagcacatgatgatgatgatgaggatgataaaagttctggggacacagat
ccatgcagtgatgctgaggggacaatcacttggcagcaaacctcaacagtccacaggagg
aaaagtcaaaagaacaagaaaaagaagtctgaagcagctgaatccacaacctccttgttt
gacgtcccagacctctggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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