KEGG   Asparagus officinalis (garden asparagus): 109835422
Entry
109835422         CDS       T05243                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7-like
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03020  RNA polymerase
aof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109835422
  09124 Replication and repair
   03420 Nucleotide excision repair
    109835422
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aof03021]
    109835422
   03019 Messenger RNA biogenesis [BR:aof03019]
    109835422
   03400 DNA repair and recombination proteins [BR:aof03400]
    109835422
Transcription machinery [BR:aof03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109835422
Messenger RNA biogenesis [BR:aof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109835422
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109835422
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 109835422
NCBI-ProteinID: XP_020258985
Position
3:complement(90863033..90867179)
AA seq 171 aa
MFFHIQLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVDDIGKGLIR
EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDVPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIVCLSASIFSIFLVLL
NT seq 516 nt   +upstreamnt  +downstreamnt
atgttcttccacattcaattagagcgcaacatgcaactccacccccgccatttcgggccc
cacctccgcgacaagctcgtcgccaagctcatgaaggacgtcgaaggcacctgcagcgga
cgtcacgggtttgtcgttgctatcactggcgtcgatgacattggaaaaggcctcatcagg
gagggcactggatttgttactttccctgttaagtatcagtgcgtcgttttcagacctttc
aaaggggagattcttgaagctgtagttactatggtcaataagatgggtttctttgcggaa
gcggggccggtgcagatcttcgtgtcgaatcatttgatccctgatgatatggagttccaa
tcaggagatgttccgaactacactacatcagatggatcggtgaaaattcaaaaagagtgt
gaagtacgattaaagataattggaacccgtgttgatgccacggaaattgtatgtctttct
gcatctattttttccatttttttagtacttttatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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