KEGG   Asparagus officinalis (garden asparagus): 109836885
Entry
109836885         CDS       T05243                                 
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor IIB-like
  KO
K03124  transcription initiation factor TFIIB
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109836885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aof03021]
    109836885
Transcription machinery [BR:aof03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     109836885
 Prokaryotic type
  Archaeal type
    TFB
     109836885
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon Cyclin_N RB_B Ribosomal_S27e SerH
Other DBs
NCBI-GeneID: 109836885
NCBI-ProteinID: XP_020260516
Position
4:complement(20701358..20710857)
AA seq 317 aa
MSDAFCPDCKRSTEVVFDHSAGDTVCLRVRATCSRPTRIDETSEWRTFANESRRVTIRFA
DRWASNPLLTRRRCFRTVISKPNWAAPQGDFLSSSLGRWQNRGSNSDRSLILAFRTIATM
ADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVA
NGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSSLGMANQAVKAAQEAVQ
KSEELDIRRSPISIAAAVIYIITQLSEEKKLLRDISVATGVAEGTIRNSYKDLHPYVAKI
IPTWFAKEEDLKNLCSP
NT seq 954 nt   +upstreamnt  +downstreamnt
atgtcggatgcgttctgccctgactgcaagcggagcacggaggtcgtcttcgaccactcc
gccggcgacaccgtctgcctccgagtgcgggctacgtgctcgaggcccactcggatcgac
gaaacctcagaatggaggacgtttgcgaatgaatcgcggcgagtaacgatccggttcgct
gatcggtgggcctctaacccgcttctaacccgacggcggtgctttcggacggtgatatcg
aagccgaactgggctgcgccacagggggattttctgtcctcgtcgcttggtcgttggcag
aatcgggggtcgaattctgatcggtcgttgattttggcgtttcggacgattgctaccatg
gctgataggttaggtcttgttgccactatcaaggaccgagccaatgaaatatacaagaag
gtggaagaccttaaatccattagaggaagaaaccaagatgcaattttggctgcttgtctt
tacattgcttgtcgacaagaggacaggcctcgcactgtaaaggaaatctgttctgttgcc
aatggagctacaaagaaggaaattggccgggcaaaagagtttattgtgaagcagctggag
gttgaaatgggtcaatcaatggagatgggcactattcatgcgggagatttcctgaggcgt
ttctgttcatctcttggcatggctaaccaagctgttaaagctgctcaagaagcagttcag
aagtcagaagaacttgatataaggaggagccccatatctattgcagcagctgttatttat
atcataacacaattgtcagaagagaagaaacttctaagagatatctcagtggcaacggga
gtagcagaaggcaccatacgaaattcatataaggatctgcatccctatgttgccaagatt
attccaacttggtttgctaaggaagaggatctcaaaaatctctgcagcccataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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