KEGG   Asparagus officinalis (garden asparagus): 109848854
Entry
109848854         CDS       T05243                                 
Name
(RefSeq) LOW QUALITY PROTEIN: RNA pseudouridine synthase 2, chloroplastic
  KO
K06180  23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Organism
aof  Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:aof00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:aof03009]
    109848854
Enzymes [BR:aof01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.23  23S rRNA pseudouridine1911/1915/1917 synthase
     109848854
Ribosome biogenesis [BR:aof03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    109848854
SSDB
Motif
Pfam: PseudoU_synth_2 S4 RcpC VDE
Other DBs
NCBI-GeneID: 109848854
NCBI-ProteinID: XP_020274150
Position
7:complement(88440562..88484331)
AA seq 434 aa
MLSLTATPTASSLSSPLKLLRRNPNPRYPRVHCSSTSTLNSGPNPNPQPVRANHAGVRFE
GIVDVGSAKARIDSWIASXXXXXXXXAXGLVAVNGRTVQKVSHRIKEGDKVSCTVSELQP
LRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCRLPTAACTDNK
RCIESEECIDSSDNEIEDFPIDQSIEEFSSDNNDALVRPGIVHRLDKGTSGLLVIAKDEH
SHSHLAEQFKNHIIHRVYISLTSGVPRPDSGRIEVPIARDSSNRIRMAAVPGLKNSKHAR
YAASRYKVVEVFAGGGSALVRWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMALSLL
KPRIPSNSHGHLSCMVSRLQRPCLHALSLGFTHPHTGVYLRFSCPPPDDFSEVLSLLRSF
SQQTGENSDTELEV
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgctgtctctcacagccactcctaccgcctcgtccctctcctctcccctcaaactcctc
cgccgaaaccctaaccctaggtaccccagagtccactgctcttcaacttccaccctcaat
tcgggtccaaaccctaatccacagcccgttagggccaaccacgccggagttcggttcgaa
gggatcgtcgacgttggttcagcgaaggccaggatcgactcatggatcgcttcannnnnn
nnnnnnnnnnnnnnnnnngctnccggcctcgtcgctgtcaacggccgcaccgtccaaaag
gtttcacatagaattaaggaaggagataaagttagttgtactgtttctgaattgcaaccc
ttaagggccgaaccagaagatatacctctggatattgtatttgaagatgctcatgttcta
gttgtaaataaacctgcacacatggttgttcacccagcacctggaaatgctaatggcaca
ttagtaaatgccgtacttaatcattgtaggcttccaactgctgcatgcacggacaacaaa
aggtgcatagaaagtgaggaatgtattgactcttctgataatgagattgaagatttcccc
attgatcagtcgatcgaagagttcagttcagacaacaatgacgcccttgtgcgccctggg
atagtacacaggctagacaagggtacaagtggattacttgttatagcaaaggatgaacat
tctcattcccatttagcggaacagtttaagaatcatatcatccatcgtgtgtacatcagt
cttacttctggagttcctcgtcctgattctggacgtattgaggttccaattgctcgtgat
tcgagtaatcggattcgcatggctgctgttcctgggctgaagaacagtaaacatgctcgc
tatgctgctagtaggtataaagtagttgaagtttttgctggtggggggtcagcattggtg
agatggaggttggaaacaggtcgcacccatcagatacgagcacatgcaaagtatctggga
gtacccctattaggtgatgaattatatggaggaactaagggcatggcactgtcactattg
aaaccaagaataccttcaaatagtcatggccacctttcttgcatggtatcgagattgcag
aggccctgcttacatgctttatctcttggatttacacaccctcacaccggagtgtatctg
agattctcatgccctccaccagatgatttttctgaggtgttgagcctgcttaggagtttt
tcacagcaaactggagaaaactccgatacagaactagaagtgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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