KEGG T05243: 109851011

Asparagus officinalis (garden asparagus): 109851011

Entry

109851011         CDS       T05243

Name

(RefSeq) carbon catabolite repressor protein 4 homolog 1-like

K12603

CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]

Organism

aof Asparagus officinalis (garden asparagus)

Pathway

aof03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:aof00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109851011
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aof03019]
    109851011
Enzymes [BR:aof01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     109851011
Messenger RNA biogenesis [BR:aof03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109851011
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     109851011

SSDB

Motif

Pfam:

Exo_endo_phos zf-C6H2 PDE12-like_N eIF2_C

Other DBs

NCBI-GeneID:

109851011

NCBI-ProteinID:

XP_020276702

Position

7:complement(149230969..149242106)

AA seq 605 aa
MLSVLRVHLPSEIPIVGCEITPYVLLKRPDNSISNEDVPESTPIGGYCMRYKWYRVHNDR
KVAVCSVHPTEQATLQCVGCVKMKIPVAKSFHCSSRCFADAWQHHRVLHERALSTLNENG
NEEEELYGRLNSSGSGIVNAGLSSSTTGVGQNPSLNNISTPLYPATITERSGGETWSEVG
RSRTYTPTAEDIGHVLKFECVPIDAETKIPLGTPSTFLTSRVIPAPSPTPRRMIPVNGLD
IHGQLNLDGRTSLSGTFTVLSYNILSDAYATSESYSYCPSWALSWTYRRQNLLREIIGYH
ADILCLQEVQSNHFDEFFAPELDKHGYQGLYKKKTSEVYNGNPNAVDGCATFFRRDKFSH
VKKYEVEFNKAAQSLTEAVIAAGQKKVALSRLIKDNIALIVVLEAKFNNQGQGTDTPGKR
QLLCVANTHVNVHQDHKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSVPGSASHTLL
AMGKVDPMHPDLTVDPLNILRPSTKLNHQLPLVSAYSSVARMVGLEQRRKLDPSTNEPLF
TNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHVALLAEFRCK
PRVRR

NT seq 1818 nt +upstreamnt +downstreamnt
atgctgagcgtgcttagggttcatttgccgtccgagatccccatcgttggctgcgagatc
acgccgtatgtgctcttgaagcggccggataattcgatctcgaatgaggacgtccctgaa
tcaaccccgatcgggggctattgcatgagatataagtggtaccgtgtacacaatgaccgt
aaagtggctgtctgcagtgtgcatccaactgaacaagcaacgttgcagtgtgttggttgc
gtgaagatgaaaataccagttgccaagagttttcactgctcatcaaggtgcttcgctgat
gcgtggcagcatcatcgcgttttacatgagagagcccttagcactttaaatgaaaatgga
aatgaagaagaagagttatatggtcgccttaatagtagtggatctggaattgtcaatgct
gggctttctagttcaacaacaggtgtaggacagaacccaagtttgaacaatatttccaca
cctttatatcctgcaactattacagagcggagtggaggtgaaacctggtctgaagttggg
cgctctagaacatataccccaactgctgaagatattggtcatgtgctcaagtttgaatgt
gtacctatagatgcagaaacaaagattcctcttggaacaccaagtacttttttgacctca
cgtgttattccagctccgtcacccactccacgccgtatgattcctgtaaatggacttgat
attcatgggcagctgaatcttgatggtcgaacttcattgtctggaacattcactgtgcta
tcatataacattctttctgatgcatatgcgacaagtgagtcatacagctattgcccatct
tgggccctttcttggacttaccggaggcaaaatttgttgagagaaattatcggctatcat
gctgatatcctttgtcttcaggaggttcaaagtaatcatttcgatgagttttttgctcca
gaacttgacaagcatggatatcagggactttacaagaagaaaacatccgaggtttataat
ggaaatccaaatgcagttgatggttgtgcgacatttttccgcagggacaaattttcacat
gtcaaaaaatatgaggttgagttcaataaggctgcccagtctttgactgaggctgtaatt
gcagctggtcagaagaaagttgctctgagtagattgatcaaggataatattgctcttatt
gtggtccttgaagcaaaattcaataaccaggggcagggtactgatactcctggaaagaga
cagctcctctgtgtggcaaatacacatgtcaatgttcatcaagatcacaaggatgtaaag
ctctggcaggtgcatactcttttgaaagggctggagaaaatagctgttagtgcagatata
cccatgttggtgtgtggagattttaattctgttccagggagtgcttctcatacgctgctt
gcaatgggtaaggttgatccaatgcatccggacttgactgtggacccccttaatatttta
cgcccttcaacaaagctaaaccaccagctcccactggtcagcgcatactcatccgtcgca
agaatggttgggttagagcagagaagaaagttggatccatcaacaaatgaacctttgttc
acaaattgtaccagggatttcattgggacactggattacatattttacacagcggactcg
ttgacagtggaatcactgttggaactcttggatgaggaaagcttgcgcaaagatacagca
cttccctctccagagtggtcctctgatcatgtagcacttttagctgaattccgatgcaaa
cctagggtcagacgttga

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