KEGG   Bradyrhizobium oligotrophicum: S58_02090
Entry
S58_02090         CDS       T02484                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
aol  Bradyrhizobium oligotrophicum
Pathway
aol03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aol00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    S58_02090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aol03021]
    S58_02090
   03019 Messenger RNA biogenesis [BR:aol03019]
    S58_02090
Transcription machinery [BR:aol03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     S58_02090
Messenger RNA biogenesis [BR:aol03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     S58_02090
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: BAM86228
UniProt: M4Z004
Position
complement(221202..222467)
AA seq 421 aa
MREIKLQDLKSKTPAELVSFAEENGVENASTMRKQELMFAILKQLAIQEIDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKSKHKVNFDNLTPLFPDERFRLELEDPTRKDLSPRVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAA
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVADKRTFPA
IDIARSGTRKEELITEPQNLKKMYVLRRILNPMGTMDAIDFLLDKLRSTKSNSEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatcaaactacaggacctcaagtcaaagacgccggccgagctcgtctccttc
gcggaggaaaacggggtcgagaacgccagcacgatgcgcaagcaggagctgatgttcgcc
atcctcaaacagctcgcgatccaggaaatcgacatcatcggtgaaggcgtcgtcgaggtt
ctctccgacggcttcggcttcttgcggtcgccggatgcgaactacttgcccggtcccgac
gacatctatgtttcgccctcgcagatccgccgcttcggcctgcgcaccggtgacaccatc
gagggccacatccgcagcccgaaagagggcgagcgctatttcgcgctgctcaaggtcaac
acgctgaacttcgaggatcccgagaagtccaagcacaaggtcaatttcgacaacctcacg
ccgctgtttccggacgagcgtttccggctcgagctcgaggatccgacccgcaaggatctg
tcgccgcgcgtgatcgacatcgtggcgccgatcggcaagggccagcgcgcgctgatcgtc
gcgccgccgcgcaccggcaagacggtgctgatgcagaacatcgcgcactcgatcaccgcc
aatcatcccgagtgctacctgatcgtgctgctgatcgatgagcgtccggaagaagtcacg
gacatgcagcgctcggtgaagggcgaggtggtgtcctcgactttcgacgagccggcggcg
cgtcacgtgcaggtcgcggagatggtgatcgagaaggccaagcgcctggtcgagcacggc
cgcgacgtcgtcattctcctggactcgatcacccgtctcggccgcgcctacaacaccgtc
gtgccgtcatccggcaaggtgctgaccggcggtgtcgacgccaacgcgctgcagcggccg
aagcgcttcttcggtgccgcccgcaacatcgaggaaggcggctcgctgaccatcatcgcg
accgcgctggtcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggc
accggcaactccgagctcatcctcgaccgcaaggtcgccgacaagcggaccttcccggcg
atcgacatcgcccgctccggcacccgcaaggaagagctcatcaccgagccgcaaaacctc
aagaagatgtacgtgctccgccgcatcctcaatccgatgggcacgatggacgcaatcgac
ttcctgctcgacaagctccgcagcaccaagagcaactccgagttcttcgagtcgatgaac
acctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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