KEGG   Isoalcanivorax pacificus: S7S_06500
Entry
S7S_06500         CDS       T03580                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
apac  Isoalcanivorax pacificus
Pathway
apac03030  DNA replication
apac03410  Base excision repair
apac03420  Nucleotide excision repair
apac03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    S7S_06500 (ligA)
   03410 Base excision repair
    S7S_06500 (ligA)
   03420 Nucleotide excision repair
    S7S_06500 (ligA)
   03430 Mismatch repair
    S7S_06500 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apac03032]
    S7S_06500 (ligA)
   03400 DNA repair and recombination proteins [BR:apac03400]
    S7S_06500 (ligA)
Enzymes [BR:apac01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     S7S_06500 (ligA)
DNA replication proteins [BR:apac03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     S7S_06500 (ligA)
DNA repair and recombination proteins [BR:apac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     S7S_06500 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     S7S_06500 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     S7S_06500 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      S7S_06500 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH RNA_ligase PEP-utilisers_N
Other DBs
NCBI-ProteinID: AJD47716
UniProt: A0A0B4XKT1
Position
1451079..1453406
AA seq 775 aa
MSTSAETPGAEAARLRARLNDWSYRYYVLDDPAVPDAEYDRLFRQLQALEEAHPELISAD
SPTQRVGDRPLEGFEEVRHEVPMLSLGNAFDDADLMDFDRRIRERLDLDGDVEYVAEPKL
DGLAVSLVYENGQLVRGATRGDGQTGENITSNIRTLRSVPLTLRGDAPALVEIRGEVMMT
HEGFAELNERQLAAGLKTFANPRNAAAGSLRQLDMKLTAQRPLEFFAYSVARLEGQDWPA
RHSELLEKVRDWGLRVNREVRTCAGVQALRAFYDDILKRRDRLGYDIDGVVYKVDRLDWQ
NDLGFVSRAPRWAVAHKFPAQEEITVLREVEFQVGRTGAITPVARLEPVQVGGVTVSNAT
LHNMDEITRLDLRIGDTVVIYRAGDVIPKVVSVVTERRPADARPISLPAHCPVCGSEIFT
PEGEAIARCTGGLICSAQRKEALRHFASRRAMDIEGLGEKLVDALVEQGLVHTLADLYRL
EAEPVAALERMGEKSATNLIAALEKSKQMPLSRFLFALGILQIGEETAKALASSFGELPA
IRQADEILLLAVPDVGGKVAQSVAAFFHEAHNQEVIDELLALGLTARGNGAPAPEFVARL
TVAHVLNAAKTLNAPLQGIGQKSLEKLGEQFADVGALLHADAQVLADAGLPENAASAVRA
WLSDADWAARLQRCHEQIAALRERAPATEQVQRPLAGQTWVLTGSLASLTRDQAKAMLEQ
LGAKVAGSVSKNTACVAAGEAAGSKLAKAEELGIPVLDEAGLLAMLAEHGLTPSA
NT seq 2328 nt   +upstreamnt  +downstreamnt
atgagcacatccgccgagacgcctggtgccgaagctgcccgcctgcgggcccggctcaac
gactggagttaccgctattacgtgctggatgacccggcggtgccggatgccgagtacgac
cggctgtttcggcaactgcaagcgctcgaggaggctcacccggagctgatcagcgcggat
tcgccgacccagcgtgtcggtgaccgccccctggaagggttcgaggaagtgcgtcacgag
gtgccgatgctttcgctcggcaacgcgttcgatgacgcagacctgatggatttcgaccgt
cgcattcgcgagcgcctggacctggacggtgacgtggaatatgtcgccgagccaaagctc
gatggtctggcggtgagtctggtgtacgaaaacggccaactggtccggggtgccacccgg
ggtgatggtcagaccggtgagaacatcaccagcaatatccgcactttgcgttccgtgccg
ctgacattgcggggcgacgctcccgcactggtggaaatccgtggcgaggtcatgatgacc
cacgaaggctttgccgagttgaacgaacgccagctggcggcgggcctgaaaaccttcgcc
aacccgcgcaacgcggccgccggcagcctgcgccagctcgacatgaaactgaccgcacaa
cggccgctggaattctttgcctacagtgtggcacgcctggagggccaggactggccggcg
cgtcacagcgaactgctggagaaagtgcgcgactgggggctgcgggtgaaccgggaagtg
cgtacctgcgccggtgtccaggcgttgcgtgccttttacgacgacattctcaaacgtcgc
gaccgcctcggctacgatatcgacggcgtggtgtacaaagtcgaccgtctcgactggcag
aacgacctgggctttgtctcccgcgcaccgcgctgggctgttgcgcacaaattccccgcc
caggaagaaatcaccgtgctgcgcgaggtggaattccaggtcggccgcacaggggcgatc
acgccggtcgcccgtctggagccagtccaggtaggcggcgtcaccgtcagcaatgccacc
ctgcacaacatggacgaaatcacccggctggatttacgcattggcgatacggtggtgatc
tatcgcgccggcgatgtaattccgaaagtggtcagtgtggtcacggagcggcgcccggcg
gatgcccggccgatcagcctgccggcgcattgccccgtctgcggcagcgagatctttacc
cccgaaggcgaagccattgcccgctgcaccggcggcctgatctgcagcgcccagcgcaag
gaggcgctgcgtcatttcgcctcccgccgggccatggacatcgaagggcttggtgaaaaa
ctggtggatgccctggtggaacaagggctggtgcacaccctggccgacctttatcgcctg
gaggcggagcccgtggcggcgctggaacgcatgggcgaaaaatccgcgaccaatctgatt
gccgcgttggaaaagagcaagcagatgccgctgtcgcggttcctgtttgcgctgggcatc
ctccagatcggcgaggaaacggccaaagccctggccagttcgtttggggaattgccggcg
attcgtcaggcggacgagatcctgttgctggcggtgccggatgtcggtggcaaggtggcg
cagtctgtggccgcctttttccacgaagcccataaccaggaggtgatcgacgagctgctg
gcgctggggttgaccgcccggggcaacggcgcgcccgcgccggaatttgtcgcccgcctg
acggtggcgcatgtgctgaatgccgccaagacactgaacgcgccgttgcagggcatcggc
cagaaatcactggagaagctcggcgagcagttcgccgatgtaggagcgttgctgcacgcc
gatgcccaggtgctggccgatgccggcctgccagagaatgccgccagtgcggtccgggcc
tggctgtctgatgcagactgggcggcgcgcctgcaacggtgccatgaacagatcgctgca
ctgcgtgagcgcgcgcccgccaccgagcaggtgcagcgtccgctggcagggcagacctgg
gtgctgaccggcagcctcgcctcgctcacccgcgaccaggccaaggccatgctggaacag
ctcggcgccaaggtggcaggcagcgtgtcgaaaaacactgcgtgcgtggcggctggcgaa
gccgccggcagcaagctggcaaaagcggaagaacttggcattccggtgctcgatgaagcc
ggcctgcttgccatgctggccgaacacgggttaactccgtctgcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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