KEGG   Aeropyrum pernix: APE_1353.1
Entry
APE_1353.1        CDS       T00023                                 
Name
(GenBank) ATP-dependent helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ape  Aeropyrum pernix
Pathway
ape03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ape00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    APE_1353.1
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ape03019]
    APE_1353.1
   03400 DNA repair and recombination proteins [BR:ape03400]
    APE_1353.1
Enzymes [BR:ape01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     APE_1353.1
Messenger RNA biogenesis [BR:ape03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     APE_1353.1
DNA repair and recombination proteins [BR:ape03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      APE_1353.1
SSDB
Motif
Pfam: DEAD Helicase_C Cas3-like_C_2 ResIII
Other DBs
NCBI-ProteinID: BAA80347
UniProt: Q9YCA1
Position
858609..862574
AA seq 1321 aa
MKRLWERIADSLGLRRELAFADVLDNPLLLERFLSEKGCPGDEGLREAVERGLHEIIIKV
KAAGCSVPGDIEREAAAVLIFNGKRPPGLYDVEPGGVAIAVCSDDRVVVGYGGYVLDTDS
MGPGGKARVLSNSDAAGLAAWSLGASILVHWGCRTRYPRAVDASLLSAIAVPEAGGDIGL
SIYHFSAAPGSVVDAVADIVSKSVALLESLGVDWSRMPPEVRLAPEATVARGELAGSVEI
RRSAAEVVASDAPRLFFRTWRPYILEPPGDHGYKGLEYAAYMAVRSIAYRGGSVWRALET
APAKLVEPMLRLLRSSEIRPNPRPPEPGEQVEAADLGLAGWGGEVLLDCVKPLDRCLSAA
PQASSSMPEDLRMRIEMASKKPASPRRWGRLRIRVRGWSPREIASMLGVETASQADAPKV
RLVPPQGRGPLGLVEDLRRILEGEDGRILVITPEERLASLVAEGLGGYTPDSQGEVFHRW
FVEGGLLVVPWGYLQARPEIANVADRSVVLLPEVMLRDETLARIIRLFYSGRAGLVSVQW
GRIVELLHRLGAVGVSWAAGLGEPRSSSATVAEEVVDDVLAGVVNRLLGVSRLRPGQEAV
LRRISRVYASLSPSVTIAVMPTGYGKSLLFQAPARGLAYLGYGALTLVVTPLKALMRDQT
RAALGRGLAACYIDSSLSLKARGEVLRAAAMGLIDLLYIAPERFEDARIREVVEGGRLAL
AVLDEAHTASRWGETFRNSYLYMAKTLASLRLEEGWPPILALTATATLDIIESLVAMLGA
ADYSVVDLEEDGAIPGEGSPEETIVYRIAPVRPNIAVEARIAPPGRARLDVAAEHVRELA
AWATGVSESWVGAVFTGFVKSKAMDWANAETIASRLEPALGGVCEVLVYHGQMGEKRRKM
VEERAAEPRGRKIIVATKAFGMGVDIRNLRWTLHLFPSDSVEDLVQEIGRAGRDGLPARS
LVLFDPEDFRVRRAMGLRQLPRLSSVLALYNSLVELHGREESYTLVLTPPAVPPKVVRLL
DILRTSGLLDYSITRRLHLYRLRKGVSWRDLEEAGVTPRLVLPRLGIVGFEEKVPPGEML
EPASLSIKLCISPDNSFEIFYGRHGNTGRECRRAVIERSGVALLIDLNPDVRHRSITKPT
PDLLVYHARLASLEALKVERLRKLLESLSGLRGEKSSQAFREGVREYFNKPLLRPLPENP
EKALKQPRSIECAGVSKCRALAATLERLVEVLGPLGVTIAVPSGEARASFLRAYSSLFPV
EPRIVGVRKVLNRLKAGGVAAADLGYVVAVTHKESQYNMLLSTVEGSGYPYVTVVHAKMP
V
NT seq 3966 nt   +upstreamnt  +downstreamnt
ttgaagaggctttgggagaggatcgccgatagcctggggctgaggagggagcttgcgttc
gccgacgtcctcgacaaccccctgctcctggagaggtttctcagcgagaagggctgcccg
ggggatgaggggcttcgggaggctgtggagaggggtcttcacgagattattattaaagtt
aaggctgctggctgcagtgtgccgggtgatattgaacgtgaggcggctgccgtcctgata
ttcaatggtaagaggcctcccggcttgtatgatgtcgagcccgggggggtcgccattgcc
gtttgcagcgatgacagggtggttgtagggtatggtgggtatgtgctggacaccgactcc
atggggccgggaggaaaggctagagtgctgtctaacagcgacgccgctgggctggcggca
tggagcctcggcgcctcgatacttgtgcactggggctgtcgtacccggtacccccgggct
gtagatgcctcgctgctgtcggcgatagccgttccggaagctggcggggatatcggcctc
agcatttaccacttctccgcggcgccgggcagtgttgttgatgctgtggctgatattgtg
tcaaaatctgtagccctgctcgagagtttgggggtagattggtctagaatgccgcccgag
gttaggctggctccggaggcgacggtagcccggggagaactagctggtagcgttgaaata
aggaggtcggcggcggaggtcgtcgcctccgacgctccccgactcttcttcaggacctgg
aggccctacatcctagagccgcccggggaccatggctataaggggctcgagtacgcagcg
tatatggctgtaagaagtatagcataccggggaggcagcgtctggagggctctggagact
gctccagcgaagctagtagagcctatgctgaggcttctaaggtcctcggagatcaggcct
aacccccgtcctccagagccaggggagcaggtggaggcagcagacctgggcctagcgggg
tggggtggcgaggtcctcctggactgtgtgaagcctttggaccgctgcctctccgcggcc
ccgcaggcctcatcttccatgccagaggacctgaggatgaggattgaaatggcctccaag
aagcctgccagccctagaaggtggggtaggcttaggattagggttagggggtggagccct
agggagatagcgtctatgctgggtgtggagaccgcgtcccaagcggatgctcccaaggtt
aggcttgttccccctcagggaagggggcccttggggcttgtcgaggatctgaggcggatt
ctcgagggtgaggatggtaggatacttgttataactcccgaggagaggctggcttcgctg
gttgctgaaggtcttggaggctacacgccggactcccagggtgaagtgttccaccgctgg
ttcgtggagggcggtctgctggtagtgccttggggttatctacaggcccgcccggagatc
gccaatgtggctgacaggagcgtggtgctcctgccggaggtaatgctgagggatgagacc
ctggcccgcattatacgcctcttctactctgggagagcggggctggtatcagtccagtgg
ggtaggatagtcgagctcctacataggctgggcgcggttggtgtctcctgggccgccggg
cttggcgagcccagaagctctagcgcgactgttgctgaggaggttgtggatgacgttctg
gccggcgttgtcaacaggctcctgggcgtctcaaggctgaggcctgggcaggaggctgtt
ttaaggaggatatcacgggtgtacgcatccctctcaccctcagtaaccattgccgttatg
cctacgggctatggaaaatcccttctcttccaggcccccgcacgggggctagcataccta
ggttacggggctctgaccctcgttgtgacgcctctcaaagccctaatgagggaccagaca
agagcagctctagggagggggctagcggcttgctacatcgactctagccttagcctgaag
gctaggggcgaggtgcttagggctgctgccatgggcctcatagacctcctctacattgcg
ccggagaggtttgaggacgctaggataagggaggttgttgaggggggcaggctcgcgctg
gcagtgttggacgaggcccacactgcgtcgaggtggggtgagacgtttaggaacagctac
ctctacatggctaaaaccctggctagcttgaggctggaggagggctggccaccaatcctg
gccctgacggccacggccacactagatattatagagtcgctggtggccatgcttggagcc
gccgactactcggtcgtagacctggaggaggatggcgctatacccggagagggtagcccg
gaggagactatagtctacaggatagcccccgtcaggccgaacatagctgtcgaggccagg
attgctccccccgggagggcaagacttgacgtggctgcggagcatgtgagggagctcgca
gcatgggcaacgggagtctccgagagctgggtgggagcggttttcacggggttcgtcaag
agtaaggctatggactgggctaacgctgagaccatagcctccaggcttgagcctgcgcta
ggaggggtctgcgaggtcctcgtgtaccacggccagatgggtgagaagaggaggaagatg
gtggaggagagggcggctgagccccgggggaggaagattatagtggcgactaaggcgttc
ggcatgggagtagatattaggaacctgaggtggaccctacacctattccccagcgattct
gtcgaggacctcgtacaggagatagggagggcggggagagacgggctccccgcaagatcg
ctggtcctattcgaccccgaggacttccgggttagacgcgccatggggcttagacagctt
ccacggctctcctcagtgctggctctctacaactctctcgtcgaactccatgggagggag
gagagctacaccctcgtcctaacaccacccgcagtgcctccaaaggtggtcaggctcctc
gacatactgaggacctccgggctgcttgactacagtataaccaggcgcctacacctatat
aggctgaggaagggtgtctcgtggagggatctagaggaggctggcgtcacccccaggctt
gtgctgccgaggcttggcatagttgggttcgaggagaaggtaccccccggggagatgctg
gagcctgcgagcctctcgataaagctgtgtataagtcccgacaactcctttgaaatattc
tacggcaggcatggcaacacaggtagggagtgccgtagagccgtgatagagaggtcaggc
gtggcgttgctaatagatctcaacccggacgtcaggcacaggagcattacaaagccgact
ccagacctgctcgtatatcatgccaggctcgcctccctagaagccctgaaggtggagagg
cttagaaagctcctcgaaagcctctctggcctgcggggtgaaaagtcgagccaggctttt
agagagggtgttagagaatacttcaacaaacctctcctcaggcctctgcctgagaaccct
gaaaaggctttgaagcagccgcggtctatagagtgcgcgggcgtctcaaaatgccgcgcc
ctagcagctaccctcgagaggttagtggaggtcctcggccccttaggcgttactatagct
gtccccagcggggaagctagggcttcattcctcagagcatacagcagcctcttcccagtg
gagcccagaattgtaggtgtcaggaaggtgcttaataggctgaaagcaggtggagtcgca
gcagccgacctcggctatgtagtggcggttacacacaaggagagccaatacaatatgctc
ctttccacggtagaaggctcaggctacccctacgtgaccgttgtacatgctaaaatgcca
gtataa

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