KEGG   Alteromonas pelagimontana: CA267_012305
Entry
CA267_012305      CDS       T06582                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
apel  Alteromonas pelagimontana
Pathway
apel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:apel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CA267_012305 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apel03019]
    CA267_012305 (rnr)
   03016 Transfer RNA biogenesis [BR:apel03016]
    CA267_012305 (rnr)
Enzymes [BR:apel01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CA267_012305 (rnr)
Messenger RNA biogenesis [BR:apel03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CA267_012305 (rnr)
Transfer RNA biogenesis [BR:apel03016]
 Prokaryotic type
  tRNA degradation factors
   CA267_012305 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 HTH_12 NRho UPF0158
Other DBs
NCBI-ProteinID: QJR81506
UniProt: A0A6M4MH50
Position
2801860..2804217
AA seq 785 aa
MSDDPHFQREKAKYENPVASREHLMALMKEEDKPLSFLDICAAVNASSEESRIGIQRRLR
AMEREGQVQFTKQKKYVLQKQEELIQGRVIGHRDGFGFLRPTDKSGDLFISPGQMQLFMH
DDIVEARENGTDRRGRKEAFITQVITPRAEPIVGRFFTEHGMAVVIPDDSRLNYEILIPQ
EHVNGARMGQVVVVEITQRPRRRVSPVGKIIEVLGEHMAPGMEIEMALRTFDIPHVWPNG
VTKQTENLGTEVPEDAKAGRIDLRQLPLVTIDGEDARDFDDAVFCEPLDDGGWQLWVAIA
DVSYYVRTGTALDDEAQNRGNSVYFPEQVIPMLPEVLSNGLCSLNPEVDRLCMVCEMTIS
DQGKLEGYQFYEAVMNSHARLTYSKVWQILQGDKDLHQRYEAHVPHLKNLYALYRALKKS
RLQRGAIEFETQEVKFVFNAQRKIENIVPLIRNDAHKLIEECMIMANVSAAKWLEKHKAP
ALYRVHDKPDADRLTAFTAYLSEIGVSHRINEDATPADFTDVVDKTKHRPDQELIQTMLL
RSMKQAVYDGENIGHFGLALDAYAHFTSPIRRYPDLVVHRALKSIIAKQKGKQAVSGAKA
YTHEEIEQLGEQCSTTERRADDATRDVADWLKCEFMLDHVGESFEGVVASVTNFGLFVRL
TEYHIDGLVHITSLDNDYYRYDDVKQTLVGDSGANQFRLGDALVVKVAAVNLDERKIDLT
LDQAMLRTPSGKKVSVRSASKKSGSGKGRAKKERDGRSDKGSAKGKSTSTARKTSKNKTV
KGRKD
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgagtgatgatccccatttccagcgcgaaaaagcaaaatacgaaaatccagtagccagc
agagaacacctcatggcgctaatgaaggaagaggacaagcctctgtctttcctggatatc
tgtgcagcagtcaacgcgtcgagtgaggaaagtcgaattggcattcagcgccggttgaga
gccatggagcgtgaagggcaggttcagttcaccaagcaaaaaaaatacgttctgcaaaag
caggaagagctgattcagggccgggttattggccaccgcgacggttttggctttttacgg
ccgacagataaaagcggcgacttatttatcagccccgggcaaatgcagttgtttatgcac
gatgacatcgtcgaggccagagaaaacggcaccgatcgacgtggccgcaaagaagccttt
atcacgcaagtcatcactcctcgtgctgaacctatcgtcggccgtttttttaccgagcat
ggaatggctgtagtgatcccggatgacagccgtcttaactacgaaattctgattcctcag
gagcatgtaaacggcgctcgaatggggcaggtcgtcgtggtagaaatcacccagcggccc
cgtcgtcgggttagtccggtgggaaaaataattgaagtgttgggtgagcatatggcaccg
ggcatggaaatcgaaatggcgctgcgcacgtttgatattccccacgtatggccaaatggc
gtaacaaagcaaacagagaatctaggcaccgaagtgccggaagacgccaaagcagggcga
atcgatttacgccagttacccttggttactattgatggtgaagacgcccgggatttcgac
gatgcggtattctgcgaaccattggacgatggtggctggcagctttgggtggcaattgcc
gatgtgagctattacgtacgcactggaacggctcttgatgatgaagcgcagaatcgcgga
aattcagtgtattttcctgagcaggtaatcccgatgttacctgaagtgctgtcaaacgga
ctctgttcgttaaacccggaagtggatcggttgtgtatggtgtgcgagatgacaatctcc
gatcaaggtaagcttgaaggataccagttttacgaagccgtaatgaattctcacgctcgc
ctcacatactccaaagtatggcagattttgcaaggcgataaggatcttcaccagcgttac
gaagcgcatgtgccgcatctaaagaacctttacgcgttataccgcgcgttgaaaaaatcg
cgtctgcagcggggtgccatcgaatttgaaacccaggaggttaaattcgttttcaacgct
cagcgcaaaatcgaaaatatcgtgcctttaatcagaaatgacgcgcacaagctaattgaa
gaatgcatgattatggcgaacgtcagcgcagccaaatggcttgaaaagcataaagcgcct
gcgttgtaccgcgtccacgataaacctgatgccgatcgcttaacggcttttactgcttat
ttaagcgaaattggcgtgtctcaccgaatcaacgaagatgcgactccagctgattttact
gatgtggtagataaaaccaagcaccgaccggatcaggaactcatccagacaatgctgctg
cggtcaatgaagcaggcagtatatgacggcgagaacattggccactttggtctggccctg
gatgcctacgcgcattttacttcccccattcgtcggtatcccgatcttgtggtgcatcgt
gcattgaaaagcattattgccaaacaaaagggcaaacaggcggtcagtggcgcgaaagcc
tatacccatgaagaaattgaacagttgggagaacaatgttccaccactgagcgcagggca
gacgacgccacgcgcgatgtagcagactggctcaagtgtgagttcatgctggatcatgtc
ggcgaaagtttcgaaggcgtggtggcctcggtaaccaattttggcttatttgtgcgttta
actgagtaccatatcgacggtttggtacatatcacctctctggataatgattactatcgt
tacgacgatgtgaagcaaaccttggttggagacagcggtgctaaccaatttcgccttggc
gatgcgttagtcgtgaaggttgctgcggtaaatctggatgagagaaagatagatcttacc
cttgatcaggcaatgttgcgtacgcccagcggcaaaaaagtgtcggttcgcagtgcgagt
aaaaaaagcggaagtggaaaaggcagggcgaagaaagagcgcgacggccgctcggacaaa
ggcagcgcaaaaggaaagtctacgtcgactgcgcgaaaaacatcaaaaaataaaacagta
aaaggcagaaaggattaa

DBGET integrated database retrieval system