KEGG   Acyrthosiphon pisum (pea aphid): 100168598
Entry
100168598         CDS       T01076                                 
Name
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
api  Acyrthosiphon pisum (pea aphid)
Pathway
api03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:api00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100168598
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:api03021]
    100168598
   03019 Messenger RNA biogenesis [BR:api03019]
    100168598
Transcription machinery [BR:api03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     100168598
Messenger RNA biogenesis [BR:api03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     100168598
    U7-dependent histone pre-mRNA processing factors
     100168598
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N
Other DBs
NCBI-GeneID: 100168598
NCBI-ProteinID: XP_001944509
APHIDBASE: ACYPI009283
UniProt: A0A8R2H4X4
Position
A3:13854171..13868507
AA seq 1089 aa
MRVERSQSPTEQVTSILNEAAVAPDENTKLDLLLKAKEVLLYQEPKFLPQFINDVIAYQN
DHSSTIRKFVVAFIEECCNKEKSNVCVTLPNVLMLLEDRSLVVQKRVVQAASNIYRAGLQ
WISMIDLPSSDLSNVWQDLSNLKSHVINMIDNDNEGIRTQVIKFMETVILVQTYKGEGGV
DRDNDMSLEDIPLTLKVTRRRRLEDEAKVLFDLLSRFCHSGNVGCANLMTCMGSLTLITK
FRVSFIEKVVTTLETLTKNIPNSLTLSQSTCVQKNLKVQLLSLLRLPASTEYQQTIGRIL
LDIGASNQEIMKALQVLSKNEDSKKLLRSLKRKNDDKEDKKPDKDDIPEKKRCTEGTTPE
RHINTVKAWVLEKLSPESITNLIMTFMPKLPSKLPSAFVTNYTPIAAAGTDSHIKHVAKL
LATQICGSDIVIPDLKYIIQNDDESLEGVKEEIIKMEEEDILLAQPAELNMNNCQIDPTE
AEELSIDALLRVLDTSNIVLSKQFKEVHIKAITKVAVMCSDDFRNTILDYINLDIPKNMN
LCLSWLYEEYSVCQGFIKLPTAFRNTLTSEQNYSTVLCALIRGALGIGDPKEKEDAITTF
YFESPFITDDAVDILKEICGDHAFGLFILNELVTKRPPRQLVYLNALLFFTSHKNDKLRE
IALNFISKLYKNKDLKNIIEEYATFYLGFLRLQLPPDVLFGHETGRLVKSEVWDEDSTTA
CLYLYFMLMADNYELIHELAAVFSNSQGEVKRSIIKLLPQPIQNMPMNSAEMFRLLEDIP
KGSEAMITRVLHTITEKEIPSPELVSRVKKLYENQIVEVRFLVPIISGLDKKYILNALPQ
LMKLNPNVVKEVFNRILGINYSNSNPPVSPAELLIALHTMDSDPNDLKYIIKATSLCFAE
KSVFTQEVLAIVMQNLMDVNPLPTLLMRTVIQSLTTFPRLIAFIMNILQRLILKKVWHQK
TQWEGFIKCCQKTKPNSFQVLLQLPPEQLEDVLFQCPEMRKSLLDHVLSFTEVQRSHIRQ
AIMDVIFGKKMEVPIYQNLKVKCEPVSNTNNQHVLVSKQEKQSPEKISNLKEDELRPPGD
CDEDSINGI
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgcgtgtagaacgtagtcaaagccctactgagcaggtgaccagtattttaaatgaagct
gctgtggcgcctgatgaaaacactaaacttgatttactacttaaggctaaagaagtattg
ttgtatcaagaaccaaaatttttaccacaatttattaatgatgtaattgcgtatcaaaat
gatcatagttcaacaataagaaaatttgttgtagcgtttatagaagaatgctgcaataaa
gaaaaatcaaatgtatgtgtcacattgccaaatgtattaatgttactggaggatcgatca
cttgtggtccaaaaaagagtggttcaagccgctagcaatatatacagagctggattacaa
tggatatcaatgattgatttacctagttctgatctatcaaatgtatggcaagatttatcc
aatctgaaatcgcatgtaattaacatgattgacaatgataatgaaggtattcgtacacaa
gttattaaattcatggaaactgtaatacttgtgcaaacatacaaaggtgaaggtggtgta
gatcgtgataatgatatgtcacttgaagatatacctttaactcttaaagttacccgccgt
agaagacttgaagatgaagcaaaggtattgtttgatcttctgtcaagattttgtcattct
ggtaatgtaggctgtgcaaatttaatgacttgcatgggatcattaacattgataaccaaa
ttccgtgtgtcatttattgaaaaagttgtaactacattagaaacattaactaaaaacata
ccaaattctttaactctaagtcaatcaacctgtgttcagaaaaatctaaaagtacaatta
ttaagtttattgcgtctccctgcttcaactgaatatcagcaaactattggaagaatatta
ttggacattggtgcttccaatcaagaaattatgaaagcacttcaggttttgtcaaaaaat
gaagatagtaaaaagttattgcgatccttaaaacgtaaaaatgatgataaagaagataaa
aaaccagataaagatgacattccagaaaaaaagagatgtactgaaggtacaacaccagaa
cgacatattaatacagttaaagcatgggtacttgaaaaattatcaccagaatccatcaca
aaccttataatgacattcatgccaaaattaccatcaaaattgccttcagcttttgtaaca
aattatactccaatagctgcagctggtactgatagccacattaaacatgttgccaaatta
ttagctactcaaatatgtggatcagatattgttattcctgatctgaagtacataatccaa
aatgatgatgaatcattagaaggagtaaaagaagaaattataaaaatggaggaagaagat
atacttttagctcaaccagcagaattaaatatgaataactgtcaaattgatcctactgaa
gctgaagaactatctattgacgctttacttagagttttagacactagtaacattgttttg
tcaaaacagtttaaagaagtacacattaaagctataactaaagtggcagttatgtgtagt
gatgattttcgcaacactatactcgactatataaatctagatattcctaaaaatatgaat
ttatgcttatcatggttgtatgaagagtatagtgtatgtcaaggatttattaaactgcca
acagcattcagaaatactttaacttcagaacaaaattacagtactgttttatgtgcactt
atcagaggcgcattaggtattggagatcccaaagaaaaagaagatgctataaccactttt
tattttgaaagtccatttattactgacgatgctgtagatattttgaaagaaatttgtggt
gatcatgcatttggtctattcattctcaatgagttggttactaaacgtcctccaagacag
ttagtgtatttaaatgcacttcttttcttcacttcacataagaatgataaacttcgagag
attgcattgaactttatcagtaaattgtataaaaataaagatttgaaaaatattattgaa
gaatatgctactttttacttgggattcttaagattacaacttccccctgatgtacttttt
ggtcatgaaacaggccgattggtcaaatctgaagtgtgggatgaagactcgactacagct
tgcttatacctatatttcatgttaatggccgataactacgaactaattcatgaattagca
gctgtattttctaactctcaaggagaagtaaaacgttcaattataaaacttttaccacaa
cctattcaaaatatgccaatgaattcagctgaaatgtttagacttcttgaggacatacca
aaagggtctgaagcaatgataaccagagtgttgcatactattactgaaaaagaaattcca
tcaccagagttagtatcaagagttaaaaaattatatgaaaatcagatagttgaagtacgt
ttcttggtaccaataatatcaggtttagataagaaatatattttgaatgctttaccacaa
ctaatgaaattaaatccaaatgttgtaaaagaggtgttcaatagaattttgggcattaac
tattcaaactcaaatcctcctgtcagtccagctgagcttttgattgcgttacacacaatg
gattcagatcctaatgacctcaaatacattattaaagctacatcactatgttttgcggaa
aaatcagtattcacacaagaggtattggcaattgtcatgcagaatttaatggatgtaaat
ccattaccaactttattgatgcgtacagttatacagtccctgacaacttttccccgtttg
attgcttttataatgaatatactccagagacttatcctaaaaaaagtgtggcaccaaaag
acacaatgggagggattcataaagtgttgtcagaagacaaaacctaatagttttcaggtg
ttactacaattgccaccagaacagctggaagatgttttatttcaatgcccagaaatgaga
aaatcattattagatcatgtacttagttttactgaagtacagcgctcacatattcgtcaa
gcaatcatggatgttatatttggaaaaaaaatggaagtaccaatttatcaaaatttaaaa
gttaaatgtgaacctgtaagcaatacaaataatcaacatgttttagtttctaaacaagaa
aaacaatcacctgaaaaaatatccaatttgaaagaggacgagcttagacctccaggtgat
tgtgatgaagactcaattaatggaatatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   APHIDBASE (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (51)   

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